RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 FMNL3Q8IVF7 1028 aa9.9□□□□□ -0.83
PTPN3-204ENST00000446349 ANKRD62A6NC57 917 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 TSPY2A6NKD2 308 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 PARP10Q53GL7 1025 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 CDCA7LQ96GN5 454 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 PLXNC1O60486 1568 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 FAM43AQ8N2R8 423 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 NCOA7Q8NI08 942 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 TNPO1Q92973 898 aaKnown RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 C8orf37Q96NL8 207 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 UPF3BQ9BZI7 483 aaKnown RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 DNAJC5BQ9UF47 199 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 ATP7AQ04656 1500 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 NPATQ14207 1427 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 NUP153P49790 1475 aaKnown RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 CCDC83Q8IWF9 413 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 ANO10Q9NW15 660 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 PIK3C2GO75747 1445 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 STK3Q13188 491 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 AMER1Q5JTC6 1135 aaPredicted RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 TCOF1Q13428 1488 aaKnown RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 ZNF710Q8N1W2 664 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 ESR2Q92731 530 aa9.89□□□□□ -0.83
PTPN3-204ENST00000446349 RBM17Q96I25 401 aaKnown RBP9.89□□□□□ -0.83
PTPN3-204ENST00000446349 DNMT1P26358 1616 aaKnown RBP9.88□□□□□ -0.83
PTPN3-204ENST00000446349 SPA17Q15506 151 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 RARSP54136 660 aaKnown RBP9.88□□□□□ -0.83
PTPN3-204ENST00000446349 GBP3Q9H0R5 595 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 IL1RAPL2Q9NP60 686 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 MAP3K11Q16584 847 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 BOLA2Q9H3K6 86 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 PRPF40AO75400 957 aaKnown RBP9.88□□□□□ -0.83
PTPN3-204ENST00000446349 RMND1Q9NWS8 449 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 KIF1BO60333 1816 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 GOLGA8AA7E2F4 631 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 GOLGA8BA8MQT2 603 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 ANAPC15P60006 121 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 CCDC91Q7Z6B0 441 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 STK24Q9Y6E0 443 aa9.88□□□□□ -0.83
PTPN3-204ENST00000446349 GLT8D2Q9H1C3 349 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 MCM5P33992 734 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 KIAA1328Q86T90 577 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 LRRFIP2Q9Y608 721 aaKnown RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 YTHDC2Q9H6S0 1430 aaKnown RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 PRKCSHP14314 528 aaPredicted RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 ZFYVE16Q7Z3T8 1539 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 KCNA6P17658 529 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 CALML3P27482 149 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 PLVAPQ9BX97 442 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 TAOK3Q9H2K8 898 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 ZSCAN16Q9H4T2 348 aaPredicted RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 LIMCH1Q9UPQ0 1083 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 EXOC6BQ9Y2D4 811 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 IFI16Q16666 785 aaKnown RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 SSH1Q8WYL5 1049 aa9.87□□□□□ -0.83
PTPN3-204ENST00000446349 TTC12Q9H892 705 aaPredicted RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 SEPT11Q9NVA2 429 aaKnown RBP9.87□□□□□ -0.83
PTPN3-204ENST00000446349 CEBPZQ03701 1054 aaKnown RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 TMEM67Q5HYA8 995 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 EMILIN1Q9Y6C2 1016 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 GPTP24298 496 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 KSR2Q6VAB6 950 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 GIGYF2Q6Y7W6 1299 aaKnown RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 CACNA2D4Q7Z3S7 1137 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 HOOK3Q86VS8 718 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 TFCP2L1Q9NZI6 479 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 RTL9Q8NET4 1388 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 ZSCAN12O43309 604 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 USO1O60763 962 aaKnown RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 ZBTB3Q9H5J0 574 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 GRM8O00222 908 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 TSPY3P0CV98 308 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 TSPY8P0CW00 308 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 IARSP41252 1262 aaKnown RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 BRDTQ58F21 947 aaPredicted RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 TRAPPC3LQ5T215 181 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 UBE3BQ7Z3V4 1068 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 MAP3K5Q99683 1374 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 ATP2B3Q16720 1220 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 STK11IPQ8N1F8 1099 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 USHBP1Q8N6Y0 703 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 CCDC85AQ96PX6 553 aaPredicted RBP9.86□□□□□ -0.83
PTPN3-204ENST00000446349 MAPKBP1O60336 1514 aa9.86□□□□□ -0.83
PTPN3-204ENST00000446349 CCDC174Q6PII3 467 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 HOXB7P09629 217 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 NIP7Q9Y221 180 aaKnown RBP eCLIP9.85□□□□□ -0.83
PTPN3-204ENST00000446349 GOLIM4O00461 696 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 CLEC11AQ9Y240 323 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 PIBF1Q8WXW3 757 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 MAP9Q49MG5 647 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 IP6K1Q92551 441 aa9.85□□□□□ -0.83
PTPN3-204ENST00000446349 MAP4K4O95819 1239 aaPredicted RBP9.85□□□□□ -0.83
PTPN3-204ENST00000446349 NAA16Q6N069 864 aaPredicted RBP9.85□□□□□ -0.83
PTPN3-204ENST00000446349 DZIP3Q86Y13 1208 aaKnown RBP9.85□□□□□ -0.83
PTPN3-204ENST00000446349 NEMFO60524 1076 aa9.84□□□□□ -0.83
PTPN3-204ENST00000446349 UBA7P41226 1012 aa9.84□□□□□ -0.83
PTPN3-204ENST00000446349 NUTM1Q86Y26 1132 aa9.84□□□□□ -0.83
PTPN3-204ENST00000446349 CCDC112Q8NEF3 446 aa9.84□□□□□ -0.83
PTPN3-204ENST00000446349 EDC4Q6P2E9 1401 aaKnown RBP9.84□□□□□ -0.83
PTPN3-204ENST00000446349 PRAG1Q86YV5 1406 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms