RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 RTN1Q16799 776 aa8.8□□□□□ -1
CLK1-203ENST00000409769 MICALL1Q8N3F8 863 aa8.8□□□□□ -1
CLK1-203ENST00000409769 PPP1R12CQ9BZL4 782 aa8.8□□□□□ -1
CLK1-203ENST00000409769 IGFBP4P22692 258 aa8.79□□□□□ -1
CLK1-203ENST00000409769 ZNF280CQ8ND82 737 aa8.79□□□□□ -1
CLK1-203ENST00000409769 TGFBR3LH3BV60 316 aa8.78□□□□□ -1
CLK1-203ENST00000409769 ALBP02768 609 aa8.78□□□□□ -1
CLK1-203ENST00000409769 EPB42P16452 691 aa8.78□□□□□ -1
CLK1-203ENST00000409769 TRIM28Q13263 835 aaKnown RBP8.78□□□□□ -1
CLK1-203ENST00000409769 PTK7Q13308 1070 aa8.78□□□□□ -1
CLK1-203ENST00000409769 BHMTQ93088 406 aa8.78□□□□□ -1
CLK1-203ENST00000409769 HINFPQ9BQA5 517 aa8.78□□□□□ -1
CLK1-203ENST00000409769 STARD13Q9Y3M8 1113 aa8.78□□□□□ -1
CLK1-203ENST00000409769 LILRB5O75023 590 aa8.77□□□□□ -1.01
CLK1-203ENST00000409769 CHMP7Q8WUX9 453 aaPredicted RBP8.77□□□□□ -1.01
CLK1-203ENST00000409769 VRTNQ9H8Y1 702 aa8.77□□□□□ -1.01
CLK1-203ENST00000409769 C11orf16Q9NQ32 467 aa8.77□□□□□ -1.01
CLK1-203ENST00000409769 USP17L15C9J2P7 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L10C9JJH3 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L13C9JLJ4 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L12C9JPN9 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L11C9JVI0 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L21D6R901 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L18D6R9N7 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L22D6RA61 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L17D6RBQ6 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L19D6RCP7 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L20D6RJB6 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 NID1P14543 1247 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 USP17L24Q0WX57 530 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 COL9A3Q14050 684 aaPredicted RBP8.76□□□□□ -1.01
CLK1-203ENST00000409769 PCSK7Q16549 785 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 KANK4Q5T7N3 995 aaPredicted RBP8.76□□□□□ -1.01
CLK1-203ENST00000409769 C20orf204Q6ZNR8 217 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 RAB44Q7Z6P3 723 aaPredicted RBP8.76□□□□□ -1.01
CLK1-203ENST00000409769 ANKMY2Q8IV38 441 aa8.76□□□□□ -1.01
CLK1-203ENST00000409769 UBE2OQ9C0C9 1292 aaKnown RBP8.76□□□□□ -1.01
CLK1-203ENST00000409769 DPYDQ12882 1025 aa8.75□□□□□ -1.01
CLK1-203ENST00000409769 CRTC2Q53ET0 693 aaPredicted RBP8.75□□□□□ -1.01
CLK1-203ENST00000409769 NGLY1Q96IV0 654 aa8.75□□□□□ -1.01
CLK1-203ENST00000409769 PNMA5Q96PV4 448 aa8.75□□□□□ -1.01
CLK1-203ENST00000409769 FOXO3O43524 673 aa8.74□□□□□ -1.01
CLK1-203ENST00000409769 CCINQ13939 588 aa8.74□□□□□ -1.01
CLK1-203ENST00000409769 C14orf37Q86TY3 774 aa8.74□□□□□ -1.01
CLK1-203ENST00000409769 C9orf172C9J069 976 aa8.73□□□□□ -1.01
CLK1-203ENST00000409769 LMOD1P29536 600 aaPredicted RBP8.73□□□□□ -1.01
CLK1-203ENST00000409769 DOC2BQ14184 412 aa8.73□□□□□ -1.01
CLK1-203ENST00000409769 GSX2Q9BZM3 304 aa8.73□□□□□ -1.01
CLK1-203ENST00000409769 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.73□□□□□ -1.019e-11■■■■■ 86.5
CLK1-203ENST00000409769 SLC6A14Q9UN76 642 aa8.73□□□□□ -1.01
CLK1-203ENST00000409769 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.73□□□□□ -1.01
CLK1-203ENST00000409769 TRAPPC3LQ5T215 181 aa8.72□□□□□ -1.01
CLK1-203ENST00000409769 XP32Q5T750 250 aa8.71□□□□□ -1.02
CLK1-203ENST00000409769 C8orf86Q6ZUL3 223 aa8.71□□□□□ -1.02
CLK1-203ENST00000409769 VTI1AQ96AJ9 217 aa8.71□□□□□ -1.02
CLK1-203ENST00000409769 SEMA6BQ9H3T3 888 aa8.71□□□□□ -1.02
CLK1-203ENST00000409769 DMGDHQ9UI17 866 aaKnown RBP8.71□□□□□ -1.02
CLK1-203ENST00000409769 ELNP15502 786 aa8.7□□□□□ -1.02
CLK1-203ENST00000409769 RAC1P63000 192 aa8.7□□□□□ -1.02
CLK1-203ENST00000409769 NRG1Q02297 640 aaPredicted RBP8.7□□□□□ -1.02
CLK1-203ENST00000409769 TBC1D8BQ0IIM8 1120 aa8.7□□□□□ -1.02
CLK1-203ENST00000409769 JPH1Q9HDC5 661 aaPredicted RBP8.7□□□□□ -1.02
CLK1-203ENST00000409769 MAP3K6O95382 1288 aa8.69□□□□□ -1.02
CLK1-203ENST00000409769 ARID4AP29374 1257 aaPredicted RBP8.69□□□□□ -1.02
CLK1-203ENST00000409769 WEE1P30291 646 aa8.69□□□□□ -1.02
CLK1-203ENST00000409769 ARSDP51689 593 aa8.69□□□□□ -1.02
CLK1-203ENST00000409769 MYO19Q96H55 970 aa8.69□□□□□ -1.02
CLK1-203ENST00000409769 IGFLR1Q9H665 355 aa8.69□□□□□ -1.02
CLK1-203ENST00000409769 DNAJB12Q9NXW2 375 aaKnown RBP8.69□□□□□ -1.02
CLK1-203ENST00000409769 A0A0A0MRY4 1105 aa8.68□□□□□ -1.02
CLK1-203ENST00000409769 NFKB1P19838 968 aa8.68□□□□□ -1.02
CLK1-203ENST00000409769 INPP5BP32019 993 aa8.68□□□□□ -1.02
CLK1-203ENST00000409769 IDH3AP50213 366 aa8.68□□□□□ -1.02
CLK1-203ENST00000409769 Q8N3U1 123 aa8.68□□□□□ -1.02
CLK1-203ENST00000409769 ARXQ96QS3 562 aa8.68□□□□□ -1.02
CLK1-203ENST00000409769 FRRS1LQ9P0K9 344 aa8.68□□□□□ -1.02
CLK1-203ENST00000409769 BCS1LQ9Y276 419 aa8.68□□□□□ -1.02
CLK1-203ENST00000409769 FAM229AH3BQW9 127 aa8.67□□□□□ -1.02
CLK1-203ENST00000409769 RGS9O75916 674 aaPredicted RBP8.67□□□□□ -1.02
CLK1-203ENST00000409769 RSPO4Q2I0M5 234 aaPredicted RBP8.67□□□□□ -1.02
CLK1-203ENST00000409769 C11orf91Q3C1V1 193 aa8.67□□□□□ -1.02
CLK1-203ENST00000409769 NKAPLQ5M9Q1 402 aa8.67□□□□□ -1.02
CLK1-203ENST00000409769 PSAPL1Q6NUJ1 521 aa8.67□□□□□ -1.02
CLK1-203ENST00000409769 FAM200AQ8TCP9 573 aa8.67□□□□□ -1.02
CLK1-203ENST00000409769 DGKZQ13574 1117 aa8.66□□□□□ -1.02
CLK1-203ENST00000409769 GRIK4Q16099 956 aa8.66□□□□□ -1.02
CLK1-203ENST00000409769 DTWD1Q8N5C7 304 aa8.66□□□□□ -1.02
CLK1-203ENST00000409769 NUDT8Q8WV74 236 aa8.66□□□□□ -1.02
CLK1-203ENST00000409769 LENG1Q96BZ8 264 aaPredicted RBP8.66□□□□□ -1.02
CLK1-203ENST00000409769 TPSG1Q9NRR2 321 aa8.66□□□□□ -1.02
CLK1-203ENST00000409769 ZNF777Q9ULD5 760 aaPredicted RBP8.66□□□□□ -1.02
CLK1-203ENST00000409769 TIMELESSQ9UNS1 1208 aa8.66□□□□□ -1.02
CLK1-203ENST00000409769 AFF1P51825 1210 aaKnown RBP8.65□□□□□ -1.02
CLK1-203ENST00000409769 ADGRE1Q14246 886 aa8.65□□□□□ -1.02
CLK1-203ENST00000409769 QTRT2Q9H974 415 aaKnown RBP8.65□□□□□ -1.02
CLK1-203ENST00000409769 KLK14Q9P0G3 267 aa8.65□□□□□ -1.02
CLK1-203ENST00000409769 MICAL2O94851 1124 aa8.64□□□□□ -1.03
CLK1-203ENST00000409769 SWI5Q1ZZU3 235 aa8.64□□□□□ -1.03
CLK1-203ENST00000409769 CFAP70Q5T0N1 1121 aa8.64□□□□□ -1.03
CLK1-203ENST00000409769 FAM35AQ86V20 835 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms