RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PDGFDQ9GZP0 370 aaPredicted RBP8.95□□□□□ -0.98
LIMA1-202ENST00000394943 NOB1Q9ULX3 412 aaKnown RBP8.95□□□□□ -0.98
LIMA1-202ENST00000394943 CACNA1SQ13698 1873 aa8.95□□□□□ -0.98
LIMA1-202ENST00000394943 ZPR1O75312 459 aa8.95□□□□□ -0.98
LIMA1-202ENST00000394943 BRIP1Q9BX63 1249 aa8.95□□□□□ -0.98
LIMA1-202ENST00000394943 MAP3K2Q9Y2U5 619 aa8.95□□□□□ -0.98
LIMA1-202ENST00000394943 R3HDM1Q15032 1099 aaKnown RBP8.94□□□□□ -0.98
LIMA1-202ENST00000394943 SUSD4Q5VX71 490 aa8.94□□□□□ -0.98
LIMA1-202ENST00000394943 STYK1Q6J9G0 422 aa8.94□□□□□ -0.98
LIMA1-202ENST00000394943 PRR5LQ6MZQ0 368 aa8.94□□□□□ -0.98
LIMA1-202ENST00000394943 SLX4Q8IY92 1834 aa8.94□□□□□ -0.98
LIMA1-202ENST00000394943 PI4KAP2A4QPH2 592 aa8.94□□□□□ -0.98
LIMA1-202ENST00000394943 ZKSCAN2Q63HK3 967 aa8.94□□□□□ -0.98
LIMA1-202ENST00000394943 PI4KAP1Q8N8J0 262 aa8.94□□□□□ -0.98
LIMA1-202ENST00000394943 KAZALD1Q96I82 304 aa8.94□□□□□ -0.98
LIMA1-202ENST00000394943 BCAR3O75815 825 aa8.94□□□□□ -0.98
LIMA1-202ENST00000394943 EIF2S2P20042 333 aaKnown RBP8.94□□□□□ -0.98
LIMA1-202ENST00000394943 TIAM2Q8IVF5 1701 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 FOXO4P98177 505 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 PPP1R42Q7Z4L9 355 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 ZBTB7BO15156 539 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-202ENST00000394943 RRP1P56182 461 aaKnown RBP8.93□□□□□ -0.98
LIMA1-202ENST00000394943 SPON1Q9HCB6 807 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 SMC4Q9NTJ3 1288 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 IRS2Q9Y4H2 1338 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 MYL6BP14649 208 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 C7orf43Q8WVR3 580 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 CRAMP1Q96RY5 1269 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 USP44Q9H0E7 712 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 CWC25Q9NXE8 425 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-202ENST00000394943 FBXO3Q9UK99 471 aa8.93□□□□□ -0.98
LIMA1-202ENST00000394943 LTBP3Q9NS15 1303 aa8.92□□□□□ -0.98
LIMA1-202ENST00000394943 SERPINB2P05120 415 aa8.92□□□□□ -0.98
LIMA1-202ENST00000394943 HSP90B1P14625 803 aaKnown RBP8.92□□□□□ -0.98
LIMA1-202ENST00000394943 GRIPAP1Q4V328 841 aa8.92□□□□□ -0.98
LIMA1-202ENST00000394943 TBC1D2BQ9UPU7 963 aa8.92□□□□□ -0.98
LIMA1-202ENST00000394943 UTP14AQ9BVJ6 771 aaKnown RBP8.92□□□□□ -0.98
LIMA1-202ENST00000394943 ANXA1P04083 346 aa8.92□□□□□ -0.98
LIMA1-202ENST00000394943 TMC4Q7Z404 712 aa8.92□□□□□ -0.98
LIMA1-202ENST00000394943 POLA2Q14181 598 aa8.91□□□□□ -0.98
LIMA1-202ENST00000394943 ANKRD44Q8N8A2 993 aa8.91□□□□□ -0.98
LIMA1-202ENST00000394943 SETDB2Q96T68 719 aa8.91□□□□□ -0.98
LIMA1-202ENST00000394943 SALL2Q9Y467 1007 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-202ENST00000394943 RFX5P48382 616 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-202ENST00000394943 VPS33BQ9H267 617 aa8.91□□□□□ -0.98
LIMA1-202ENST00000394943 SH3TC1Q8TE82 1336 aa8.91□□□□□ -0.98
LIMA1-202ENST00000394943 ELL2O00472 640 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-202ENST00000394943 MMP10P09238 476 aa8.91□□□□□ -0.98
LIMA1-202ENST00000394943 PIP4K2AP48426 406 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-202ENST00000394943 MVPQ14764 893 aaKnown RBP8.91□□□□□ -0.98
LIMA1-202ENST00000394943 SRCIN1Q9C0H9 1055 aa8.91□□□□□ -0.98
LIMA1-202ENST00000394943 ZBTB40Q9NUA8 1239 aa8.91□□□□□ -0.98
LIMA1-202ENST00000394943 DOCK2Q92608 1830 aa8.91□□□□□ -0.98
LIMA1-202ENST00000394943 TAF1P21675 1872 aa8.9□□□□□ -0.98
LIMA1-202ENST00000394943 GRM8O00222 908 aa8.9□□□□□ -0.98
LIMA1-202ENST00000394943 SRGNP10124 158 aa8.9□□□□□ -0.98
LIMA1-202ENST00000394943 RLBP1P12271 317 aa8.9□□□□□ -0.98
LIMA1-202ENST00000394943 TPTE2Q6XPS3 522 aa8.9□□□□□ -0.98
LIMA1-202ENST00000394943 C15orf52Q6ZUT6 534 aaKnown RBP8.9□□□□□ -0.98
LIMA1-202ENST00000394943 SMIM5Q71RC9 77 aa8.9□□□□□ -0.98
LIMA1-202ENST00000394943 DZIP1LQ8IYY4 767 aaKnown RBP8.9□□□□□ -0.98
LIMA1-202ENST00000394943 RTFDC1Q9BY42 306 aaPredicted RBP8.9□□□□□ -0.98
LIMA1-202ENST00000394943 PDE8AO60658 829 aa8.9□□□□□ -0.98
LIMA1-202ENST00000394943 RIC3Q7Z5B4 369 aa8.9□□□□□ -0.98
LIMA1-202ENST00000394943 NIP7Q9Y221 180 aaKnown RBP eCLIP8.9□□□□□ -0.98
LIMA1-202ENST00000394943 PARP3Q9Y6F1 533 aa8.9□□□□□ -0.98
LIMA1-202ENST00000394943 PDE6BP35913 854 aa8.9□□□□□ -0.99
LIMA1-202ENST00000394943 FKBP5Q13451 457 aaPredicted RBP8.9□□□□□ -0.99
LIMA1-202ENST00000394943 MYD88Q99836 296 aa8.9□□□□□ -0.99
LIMA1-202ENST00000394943 MAST2Q6P0Q8 1798 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 ERICH6BQ5W0A0 696 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 ARXQ96QS3 562 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 ZBTB3Q9H5J0 574 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 HDAC5Q9UQL6 1122 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 PHF14O94880 888 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 NEXNQ0ZGT2 675 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-202ENST00000394943 CHMP4BQ9H444 224 aaKnown RBP8.89□□□□□ -0.99
LIMA1-202ENST00000394943 WDR90Q96KV7 1748 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 ADAMTSL1Q8N6G6 1762 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 POLD1P28340 1107 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 ERFEQ4G0M1 354 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 PODXL2Q9NZ53 605 aa8.89□□□□□ -0.99
LIMA1-202ENST00000394943 NPR1P16066 1061 aa8.88□□□□□ -0.99
LIMA1-202ENST00000394943 TMEM57Q8N5G2 664 aa8.88□□□□□ -0.99
LIMA1-202ENST00000394943 NOP58Q9Y2X3 529 aaKnown RBP8.88□□□□□ -0.99
LIMA1-202ENST00000394943 GNAI3P08754 354 aa8.88□□□□□ -0.99
LIMA1-202ENST00000394943 CTSWP56202 376 aa8.88□□□□□ -0.99
LIMA1-202ENST00000394943 ST5P78524 1137 aa8.88□□□□□ -0.99
LIMA1-202ENST00000394943 CNBD1Q8NA66 436 aa8.88□□□□□ -0.99
LIMA1-202ENST00000394943 TTLL11Q8NHH1 800 aa8.88□□□□□ -0.99
LIMA1-202ENST00000394943 CHD4Q14839 1912 aa8.88□□□□□ -0.99
LIMA1-202ENST00000394943 CIAO1O76071 339 aa8.87□□□□□ -0.99
LIMA1-202ENST00000394943 DDX19BQ9UMR2 479 aa8.87□□□□□ -0.99
LIMA1-202ENST00000394943 LAMB1P07942 1786 aa8.87□□□□□ -0.99
LIMA1-202ENST00000394943 MASTLQ96GX5 879 aa8.87□□□□□ -0.99
LIMA1-202ENST00000394943 F6X3S4 739 aa8.87□□□□□ -0.99
LIMA1-202ENST00000394943 CWF19L2Q2TBE0 894 aaKnown RBP8.87□□□□□ -0.99
LIMA1-202ENST00000394943 SSH3Q8TE77 659 aa8.87□□□□□ -0.99
LIMA1-202ENST00000394943 NECTIN2Q92692 538 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms