RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 XAGE3Q8WTP9 111 aa10.79□□□□□ -0.68
LIMCH1-202ENST00000381753 LRFN2Q9ULH4 789 aa10.79□□□□□ -0.68
LIMCH1-202ENST00000381753 SUPT6HQ7KZ85 1726 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-202ENST00000381753 ABCC5O15440 1437 aa10.79□□□□□ -0.68
LIMCH1-202ENST00000381753 GTF3C6Q969F1 213 aa10.79□□□□□ -0.68
LIMCH1-202ENST00000381753 THUMPD2Q9BTF0 503 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 FTOQ9C0B1 505 aaKnown RBP eCLIP10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 AP5M1Q9H0R1 490 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 C14orf93Q9H972 538 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 PDZRN3Q9UPQ7 1066 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 MMP10P09238 476 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 TMEM266Q2M3C6 531 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 CCDC12Q8WUD4 166 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 TSR2Q969E8 191 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 KCNH4Q9UQ05 1017 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 PTMSP20962 102 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 TCP10Q12799 353 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 TTC6Q86TZ1 520 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 COA7Q96BR5 231 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 CIAPIN1Q6FI81 312 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 CATIPQ7Z7H3 387 aa10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 FAM193BQ96PV7 902 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-202ENST00000381753 TCP10L2B9ZVM9 353 aa10.77□□□□□ -0.68
LIMCH1-202ENST00000381753 SSR1P43307 286 aaKnown RBP10.77□□□□□ -0.68
LIMCH1-202ENST00000381753 NUCB2P80303 420 aa10.77□□□□□ -0.68
LIMCH1-202ENST00000381753 COPS6Q7L5N1 327 aa10.77□□□□□ -0.68
LIMCH1-202ENST00000381753 HOMER1Q86YM7 354 aa10.77□□□□□ -0.68
LIMCH1-202ENST00000381753 TCHPQ9BT92 498 aa10.77□□□□□ -0.68
LIMCH1-202ENST00000381753 KIF20AO95235 890 aa10.77□□□□□ -0.68
LIMCH1-202ENST00000381753 DOK7Q18PE1 504 aa10.77□□□□□ -0.68
LIMCH1-202ENST00000381753 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 WASF1Q92558 559 aa10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 RAB34Q9BZG1 259 aa10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 KIF21AQ7Z4S6 1674 aa10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 KIF5BP33176 963 aa10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 CCDC73Q6ZRK6 1079 aa10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 NCAPG2Q86XI2 1143 aa10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 PPEF1O14829 653 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 ZNF157P51786 506 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 RETREG2Q8NC44 543 aa10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 RGS22Q8NE09 1264 aa10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 TRIM6Q9C030 488 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-202ENST00000381753 STIM1Q13586 685 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 CCDC70Q6NSX1 233 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 OLFM4Q6UX06 510 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 RNF169Q8NCN4 708 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 IP6K1Q92551 441 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 C1orf115Q9H7X2 142 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 SNRKQ9NRH2 765 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 COMMD10Q9Y6G5 202 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 RAD50Q92878 1312 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 PTPDC1A2A3K4 754 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 SERPINB2P05120 415 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 CHST3Q7LGC8 479 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 TEX11Q8IYF3 940 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 CCDC178Q5BJE1 867 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 ARID3AQ99856 593 aa10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 YTHDC2Q9H6S0 1430 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-202ENST00000381753 PPP2R1AP30153 589 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 GOLGA6L1Q8N7Z2 621 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 NACA2Q9H009 215 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 NCOA1Q15788 1441 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 HCLS1P14317 486 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 MRPS9P82933 396 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 PSMD1Q99460 953 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 THRAP3Q9Y2W1 955 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 HIBADHP31937 336 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 USPL1Q5W0Q7 1092 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 HACE1Q8IYU2 909 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 ABI1Q8IZP0 508 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 C21orf2O43822 256 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 CCDC173Q0VFZ6 552 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 HELBQ8NG08 1087 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 LNPKQ9C0E8 428 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 MBIPQ9NS73 344 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 ATP10BO94823 1461 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 SH3TC1Q8TE82 1336 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 ATP2B3Q16720 1220 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 HACL1Q9UJ83 578 aa10.75□□□□□ -0.69
LIMCH1-202ENST00000381753 PDILTQ8N807 584 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 PPP2R3CQ969Q6 453 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 NEO1Q92859 1461 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 CCDC181Q5TID7 509 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 NOC2LQ9Y3T9 749 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 CCER2I3L3R5 266 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 BCAR3O75815 825 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 ARID5AQ03989 594 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 CNPY2Q9Y2B0 182 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 RAD17O75943 681 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 CPLX3Q8WVH0 158 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 GOPCQ9HD26 462 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 IL1RAPL2Q9NP60 686 aa10.74□□□□□ -0.69
LIMCH1-202ENST00000381753 TMEM2Q9UHN6 1383 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 NPATQ14207 1427 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 CCDC196A0A1B0GTZ2 297 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 CCDC194A0A1B0GVG4 234 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 GTF2IP78347 998 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 DEFB132Q7Z7B7 95 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 CPXCR1Q8N123 301 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 UIMC1Q96RL1 719 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms