RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 AK2P54819 239 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 COL9A3Q14050 684 aaPredicted RBP12.49□□□□□ -0.41
LIMA1-201ENST00000341247 KLHL40Q2TBA0 621 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 JAKMIP1Q96N16 626 aaKnown RBP12.49□□□□□ -0.41
LIMA1-201ENST00000341247 ZBTB3Q9H5J0 574 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 NMIQ13287 307 aaPredicted RBP12.49□□□□□ -0.41
LIMA1-201ENST00000341247 RRAGDQ9NQL2 400 aaPredicted RBP12.49□□□□□ -0.41
LIMA1-201ENST00000341247 HDAC5Q9UQL6 1122 aa12.49□□□□□ -0.41
LIMA1-201ENST00000341247 TTLL7Q6ZT98 887 aa12.48□□□□□ -0.41
LIMA1-201ENST00000341247 ABCA3Q99758 1704 aa12.48□□□□□ -0.41
LIMA1-201ENST00000341247 MCM2P49736 904 aa12.48□□□□□ -0.41
LIMA1-201ENST00000341247 SOS2Q07890 1332 aaPredicted RBP12.48□□□□□ -0.41
LIMA1-201ENST00000341247 GPT2Q8TD30 523 aa12.48□□□□□ -0.41
LIMA1-201ENST00000341247 DNAJC2Q99543 621 aaKnown RBP12.48□□□□□ -0.41
LIMA1-201ENST00000341247 TFCP2Q12800 502 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 ZCRB1Q8TBF4 217 aaKnown RBP12.47□□□□□ -0.41
LIMA1-201ENST00000341247 RUFY2Q8WXA3 655 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 CPDO75976 1380 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 LARGE1O95461 756 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 PTMSP20962 102 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 EVA1CP58658 441 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 EVI5LQ96CN4 794 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 CCDC85AQ96PX6 553 aaPredicted RBP12.47□□□□□ -0.41
LIMA1-201ENST00000341247 COL5A2P05997 1499 aaPredicted RBP12.47□□□□□ -0.41
LIMA1-201ENST00000341247 MRC1P22897 1456 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 A0A0D9SFI3 127 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 NBPF26B4DH59 902 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 NBPF14Q5TI25 921 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 NBPF10Q6P3W6 841 aaKnown RBP12.47□□□□□ -0.41
LIMA1-201ENST00000341247 NBPF15Q8N660 670 aa12.47□□□□□ -0.41
LIMA1-201ENST00000341247 CUL4AQ13619 759 aa12.46□□□□□ -0.41
LIMA1-201ENST00000341247 LMBR1LQ6UX01 489 aa12.46□□□□□ -0.41
LIMA1-201ENST00000341247 CLEC17AQ6ZS10 378 aa12.46□□□□□ -0.41
LIMA1-201ENST00000341247 RUFY3Q7L099 469 aa12.46□□□□□ -0.41
LIMA1-201ENST00000341247 ZSCAN23Q3MJ62 389 aa12.46□□□□□ -0.41
LIMA1-201ENST00000341247 CCDC83Q8IWF9 413 aa12.46□□□□□ -0.41
LIMA1-201ENST00000341247 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.46□□□□□ -0.412e-8■■■■■ 37.9
LIMA1-201ENST00000341247 RBM8AQ9Y5S9 174 aaKnown RBP12.46□□□□□ -0.42
LIMA1-201ENST00000341247 BRD1O95696 1058 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 NECAB1Q8N987 351 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 NEUROD6Q96NK8 337 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 TAF6LQ9Y6J9 622 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 A0A0G2JS52 829 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 KAT6BQ8WYB5 2073 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 TOGARAM1Q9Y4F4 1720 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 UTYO14607 1347 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 PTPN12Q05209 780 aaKnown RBP12.45□□□□□ -0.42
LIMA1-201ENST00000341247 SLFNL1Q499Z3 407 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 DBNDD2Q9BQY9 259 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 PDRG1Q9NUG6 133 aa12.45□□□□□ -0.42
LIMA1-201ENST00000341247 DBNLQ9UJU6 430 aaKnown RBP12.45□□□□□ -0.42
LIMA1-201ENST00000341247 USP42Q9H9J4 1324 aaKnown RBP12.44□□□□□ -0.42
LIMA1-201ENST00000341247 SYCE3A1L190 88 aa12.44□□□□□ -0.42
LIMA1-201ENST00000341247 ZNF589Q86UQ0 364 aaPredicted RBP12.44□□□□□ -0.42
LIMA1-201ENST00000341247 ZNF594Q96JF6 807 aaPredicted RBP12.44□□□□□ -0.42
LIMA1-201ENST00000341247 NASPP49321 788 aaPredicted RBP12.44□□□□□ -0.42
LIMA1-201ENST00000341247 CCDC129Q6ZRS4 1044 aa12.44□□□□□ -0.42
LIMA1-201ENST00000341247 FAM43AQ8N2R8 423 aa12.44□□□□□ -0.42
LIMA1-201ENST00000341247 TMEM63CQ9P1W3 806 aa12.44□□□□□ -0.42
LIMA1-201ENST00000341247 CCDC171Q6TFL3 1326 aa12.44□□□□□ -0.42
LIMA1-201ENST00000341247 WDR17Q8IZU2 1322 aa12.44□□□□□ -0.42
LIMA1-201ENST00000341247 PRIM1P49642 420 aaKnown RBP12.44□□□□□ -0.42
LIMA1-201ENST00000341247 DDX46Q7L014 1031 aaKnown RBP12.44□□□□□ -0.42
LIMA1-201ENST00000341247 TTC14Q96N46 770 aa12.44□□□□□ -0.42
LIMA1-201ENST00000341247 SEC62Q99442 399 aaKnown RBP12.44□□□□□ -0.42
LIMA1-201ENST00000341247 GADD45BO75293 160 aaPredicted RBP12.43□□□□□ -0.42
LIMA1-201ENST00000341247 LIMCH1Q9UPQ0 1083 aa12.43□□□□□ -0.42
LIMA1-201ENST00000341247 TNNI3KQ59H18 835 aa12.43□□□□□ -0.42
LIMA1-201ENST00000341247 CREB3L3Q68CJ9 461 aa12.43□□□□□ -0.42
LIMA1-201ENST00000341247 RNF214Q8ND24 703 aa12.43□□□□□ -0.42
LIMA1-201ENST00000341247 SMC3Q9UQE7 1217 aa12.43□□□□□ -0.42
LIMA1-201ENST00000341247 FPGT-TNNI3KV9GXZ4 949 aa12.43□□□□□ -0.42
LIMA1-201ENST00000341247 ARFGEF2Q9Y6D5 1785 aa12.43□□□□□ -0.42
LIMA1-201ENST00000341247 ZKSCAN1P17029 563 aaPredicted RBP12.42□□□□□ -0.42
LIMA1-201ENST00000341247 PLBD2Q8NHP8 589 aa12.42□□□□□ -0.42
LIMA1-201ENST00000341247 TRIM44Q96DX7 344 aaPredicted RBP12.42□□□□□ -0.42
LIMA1-201ENST00000341247 INTS4Q96HW7 963 aaKnown RBP12.42□□□□□ -0.42
LIMA1-201ENST00000341247 CYP46A1Q9Y6A2 500 aa12.42□□□□□ -0.42
LIMA1-201ENST00000341247 TIMM10P62072 90 aa12.42□□□□□ -0.42
LIMA1-201ENST00000341247 IL2RBP14784 551 aa12.42□□□□□ -0.42
LIMA1-201ENST00000341247 RFX5P48382 616 aaPredicted RBP12.42□□□□□ -0.42
LIMA1-201ENST00000341247 STK3Q13188 491 aa12.42□□□□□ -0.42
LIMA1-201ENST00000341247 KCPQ6ZWJ8 1503 aa12.42□□□□□ -0.42
LIMA1-201ENST00000341247 ANO8Q9HCE9 1232 aaPredicted RBP12.41□□□□□ -0.42
LIMA1-201ENST00000341247 PCDH11XQ9BZA7 1347 aa12.41□□□□□ -0.42
LIMA1-201ENST00000341247 PCDH11YQ9BZA8 1340 aa12.41□□□□□ -0.42
LIMA1-201ENST00000341247 RBSNQ9H1K0 784 aa12.41□□□□□ -0.42
LIMA1-201ENST00000341247 CNPY2Q9Y2B0 182 aa12.41□□□□□ -0.42
LIMA1-201ENST00000341247 NECTIN1Q15223 517 aa12.41□□□□□ -0.42
LIMA1-201ENST00000341247 COPRSQ9NQ92 184 aa12.41□□□□□ -0.42
LIMA1-201ENST00000341247 AFDNP55196 1824 aaKnown RBP12.41□□□□□ -0.42
LIMA1-201ENST00000341247 VPS37CA5D8V6 355 aaPredicted RBP12.4□□□□□ -0.42
LIMA1-201ENST00000341247 SLC27A2O14975 620 aa12.4□□□□□ -0.42
LIMA1-201ENST00000341247 FIBPO43427 364 aa12.4□□□□□ -0.42
LIMA1-201ENST00000341247 SYT1P21579 422 aa12.4□□□□□ -0.42
LIMA1-201ENST00000341247 USP48Q86UV5 1035 aa12.4□□□□□ -0.42
LIMA1-201ENST00000341247 SYTL4Q96C24 671 aaPredicted RBP12.4□□□□□ -0.42
LIMA1-201ENST00000341247 UBR2Q8IWV8 1755 aa12.4□□□□□ -0.42
LIMA1-201ENST00000341247 GJB2P29033 226 aa12.4□□□□□ -0.42
LIMA1-201ENST00000341247 ME3Q16798 604 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms