RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 MBIPQ9NS73 344 aa23.06■■□□□ 1.28
TPM1-203ENST00000317516 IFT57Q9NWB7 429 aa23.06■■□□□ 1.28
TPM1-203ENST00000317516 CHPF2Q9P2E5 772 aa23.06■■□□□ 1.28
TPM1-203ENST00000317516 SBF1O95248 1867 aa23.06■■□□□ 1.28
TPM1-203ENST00000317516 RNF123Q5XPI4 1314 aa23.06■■□□□ 1.28
TPM1-203ENST00000317516 COL11A2P13942 1736 aaPredicted RBP23.05■■□□□ 1.28
TPM1-203ENST00000317516 ZNF853P0CG23 659 aa23.05■■□□□ 1.28
TPM1-203ENST00000317516 TCIRG1Q13488 830 aa23.05■■□□□ 1.28
TPM1-203ENST00000317516 GRIPAP1Q4V328 841 aa23.05■■□□□ 1.28
TPM1-203ENST00000317516 SLC10A5Q5PT55 438 aa23.05■■□□□ 1.28
TPM1-203ENST00000317516 SMC1BQ8NDV3 1235 aa23.05■■□□□ 1.28
TPM1-203ENST00000317516 CHMP4AQ9BY43 222 aa23.05■■□□□ 1.28
TPM1-203ENST00000317516 CRAMP1Q96RY5 1269 aa23.04■■□□□ 1.28
TPM1-203ENST00000317516 TMX4Q9H1E5 349 aaPredicted RBP23.04■■□□□ 1.28
TPM1-203ENST00000317516 HYPKQ9NX55 129 aa23.04■■□□□ 1.28
TPM1-203ENST00000317516 RIC1Q4ADV7 1423 aa23.04■■□□□ 1.28
TPM1-203ENST00000317516 SLX4Q8IY92 1834 aa23.03■■□□□ 1.28
TPM1-203ENST00000317516 ANKRD13DQ6ZTN6 518 aa23.03■■□□□ 1.28
TPM1-203ENST00000317516 PLBD2Q8NHP8 589 aa23.03■■□□□ 1.28
TPM1-203ENST00000317516 ANP32CO43423 234 aa23.02■■□□□ 1.28
TPM1-203ENST00000317516 NLRP10Q86W26 655 aa23.02■■□□□ 1.28
TPM1-203ENST00000317516 SYNE4Q8N205 404 aa23.02■■□□□ 1.28
TPM1-203ENST00000317516 ZNF277Q9NRM2 450 aaPredicted RBP23.02■■□□□ 1.28
TPM1-203ENST00000317516 OLFM4Q6UX06 510 aa23.01■■□□□ 1.27
TPM1-203ENST00000317516 TRMT112Q9UI30 125 aaKnown RBP23.01■■□□□ 1.27
TPM1-203ENST00000317516 PSMD1Q99460 953 aa23■■□□□ 1.27
TPM1-203ENST00000317516 NUP98P52948 1817 aa23■■□□□ 1.27
TPM1-203ENST00000317516 DDNO94850 711 aaPredicted RBP22.99■■□□□ 1.27
TPM1-203ENST00000317516 IARSP41252 1262 aaKnown RBP22.99■■□□□ 1.27
TPM1-203ENST00000317516 SH3TC1Q8TE82 1336 aa22.99■■□□□ 1.27
TPM1-203ENST00000317516 FER1L6Q2WGJ9 1857 aa22.98■■□□□ 1.27
TPM1-203ENST00000317516 POTECB2RU33 542 aa22.98■■□□□ 1.27
TPM1-203ENST00000317516 PPEF1O14829 653 aaPredicted RBP22.98■■□□□ 1.27
TPM1-203ENST00000317516 CCDC184Q52MB2 194 aa22.98■■□□□ 1.27
TPM1-203ENST00000317516 JDP2Q8WYK2 163 aa22.98■■□□□ 1.27
TPM1-203ENST00000317516 IQCA1LA6NCM1 817 aa22.97■■□□□ 1.27
TPM1-203ENST00000317516 ELL2O00472 640 aaPredicted RBP22.97■■□□□ 1.27
TPM1-203ENST00000317516 MRS2Q9HD23 443 aa22.97■■□□□ 1.27
TPM1-203ENST00000317516 TNRC6CQ9HCJ0 1690 aaKnown RBP22.97■■□□□ 1.27
TPM1-203ENST00000317516 BBOX1O75936 387 aa22.96■■□□□ 1.27
TPM1-203ENST00000317516 HCLS1P14317 486 aaPredicted RBP22.96■■□□□ 1.27
TPM1-203ENST00000317516 C3orf67Q6ZVT6 689 aa22.96■■□□□ 1.27
TPM1-203ENST00000317516 TCERG1O14776 1098 aaKnown RBP22.95■■□□□ 1.26
TPM1-203ENST00000317516 GOLGA2Q08379 1002 aa22.95■■□□□ 1.26
TPM1-203ENST00000317516 CCDC27Q2M243 656 aa22.95■■□□□ 1.26
TPM1-203ENST00000317516 DDX46Q7L014 1031 aaKnown RBP22.95■■□□□ 1.26
TPM1-203ENST00000317516 ARFGEF2Q9Y6D5 1785 aa22.94■■□□□ 1.26
TPM1-203ENST00000317516 CEP350Q5VT06 3117 aa22.94■■□□□ 1.26
TPM1-203ENST00000317516 CCDC30Q5VVM6 783 aa22.94■■□□□ 1.26
TPM1-203ENST00000317516 RIC3Q7Z5B4 369 aa22.94■■□□□ 1.26
TPM1-203ENST00000317516 L3MBTL3Q96JM7 780 aaPredicted RBP22.94■■□□□ 1.26
TPM1-203ENST00000317516 ISCA1Q9BUE6 129 aa22.94■■□□□ 1.26
TPM1-203ENST00000317516 ATP6V0A2Q9Y487 856 aa22.94■■□□□ 1.26
TPM1-203ENST00000317516 FZD9O00144 591 aa22.93■■□□□ 1.26
TPM1-203ENST00000317516 TRIM28Q13263 835 aaKnown RBP22.93■■□□□ 1.26
TPM1-203ENST00000317516 NCBP3Q53F19 620 aaKnown RBP22.93■■□□□ 1.26
TPM1-203ENST00000317516 C8orf58Q8NAV2 365 aa22.93■■□□□ 1.26
TPM1-203ENST00000317516 ATP5J2-PTCD1G3V325 749 aa22.92■■□□□ 1.26
TPM1-203ENST00000317516 DNAJC5GQ8N7S2 189 aa22.92■■□□□ 1.26
TPM1-203ENST00000317516 TIAM2Q8IVF5 1701 aa22.91■■□□□ 1.26
TPM1-203ENST00000317516 ABCC4O15439 1325 aa22.91■■□□□ 1.26
TPM1-203ENST00000317516 EIF6P56537 245 aaKnown RBP22.91■■□□□ 1.26
TPM1-203ENST00000317516 WWC1Q8IX03 1113 aa22.91■■□□□ 1.26
TPM1-203ENST00000317516 LARGE2Q8N3Y3 721 aa22.91■■□□□ 1.26
TPM1-203ENST00000317516 SUPT20HQ8NEM7 779 aa22.91■■□□□ 1.26
TPM1-203ENST00000317516 VPS33BQ9H267 617 aa22.91■■□□□ 1.26
TPM1-203ENST00000317516 CCDC88AQ3V6T2 1871 aa22.91■■□□□ 1.26
TPM1-203ENST00000317516 DDX58O95786 925 aaKnown RBP22.9■■□□□ 1.26
TPM1-203ENST00000317516 HSP90B1P14625 803 aaKnown RBP22.9■■□□□ 1.26
TPM1-203ENST00000317516 SP8Q8IXZ3 490 aa22.9■■□□□ 1.26
TPM1-203ENST00000317516 PHAXQ9H814 394 aaKnown RBP22.9■■□□□ 1.26
TPM1-203ENST00000317516 WDR90Q96KV7 1748 aa22.9■■□□□ 1.26
TPM1-203ENST00000317516 GRAPQ13588 217 aa22.89■■□□□ 1.25
TPM1-203ENST00000317516 CHADLQ6NUI6 762 aa22.89■■□□□ 1.25
TPM1-203ENST00000317516 TMC4Q7Z404 712 aa22.89■■□□□ 1.25
TPM1-203ENST00000317516 GPC2Q8N158 579 aa22.89■■□□□ 1.25
TPM1-203ENST00000317516 GRAPLQ8TC17 118 aaPredicted RBP22.89■■□□□ 1.25
TPM1-203ENST00000317516 FAM89AQ96GI7 184 aa22.89■■□□□ 1.25
TPM1-203ENST00000317516 HACL1Q9UJ83 578 aa22.89■■□□□ 1.25
TPM1-203ENST00000317516 SNED1Q8TER0 1413 aa22.89■■□□□ 1.25
TPM1-203ENST00000317516 DICER1Q9UPY3 1922 aaKnown RBP22.88■■□□□ 1.25
TPM1-203ENST00000317516 ZNF541Q9H0D2 1346 aa22.88■■□□□ 1.25
TPM1-203ENST00000317516 CACNA1SQ13698 1873 aa22.88■■□□□ 1.25
TPM1-203ENST00000317516 TAF1DQ9H5J8 278 aaPredicted RBP22.88■■□□□ 1.25
TPM1-203ENST00000317516 IL16Q14005 1332 aa22.87■■□□□ 1.25
TPM1-203ENST00000317516 DPP8Q6V1X1 898 aaPredicted RBP22.87■■□□□ 1.25
TPM1-203ENST00000317516 NIM1KQ8IY84 436 aa22.87■■□□□ 1.25
TPM1-203ENST00000317516 MPNDQ8N594 471 aa22.87■■□□□ 1.25
TPM1-203ENST00000317516 ZNF428Q96B54 188 aa22.87■■□□□ 1.25
TPM1-203ENST00000317516 STK31Q9BXU1 1019 aa22.87■■□□□ 1.25
TPM1-203ENST00000317516 PPIP5K2O43314 1243 aa22.86■■□□□ 1.25
TPM1-203ENST00000317516 HTRA3P83110 453 aa22.86■■□□□ 1.25
TPM1-203ENST00000317516 SF3B3Q15393 1217 aaKnown RBP22.86■■□□□ 1.25
TPM1-203ENST00000317516 PNMA8AQ86V59 439 aaPredicted RBP22.86■■□□□ 1.25
TPM1-203ENST00000317516 LDHDQ86WU2 507 aa22.86■■□□□ 1.25
TPM1-203ENST00000317516 TSPYL6Q8N831 410 aa22.86■■□□□ 1.25
TPM1-203ENST00000317516 ZBTB38Q8NAP3 1195 aaPredicted RBP22.86■■□□□ 1.25
TPM1-203ENST00000317516 TSR2Q969E8 191 aaKnown RBP22.86■■□□□ 1.25
TPM1-203ENST00000317516 KLRG1Q96E93 195 aa22.86■■□□□ 1.25
TPM1-203ENST00000317516 IRS4O14654 1257 aaPredicted RBP22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms