RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 RPGRIP1LQ68CZ1 1315 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 POLR3DP05423 398 aaPredicted RBP15.85■□□□□ 0.13
CSPG4-201ENST00000308508 MIPOL1Q8TD10 442 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 EXOC1Q9NV70 894 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 ARFGAP2Q8N6H7 521 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 CCDC110Q8TBZ0 833 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 SAMD15Q9P1V8 674 aa15.85■□□□□ 0.13
CSPG4-201ENST00000308508 HS1BP3Q53T59 392 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 GOLGA8AA7E2F4 631 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 NAA25Q14CX7 972 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 A0A1B0GUL7 405 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 TACC1O75410 805 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 TMOD2Q9NZR1 351 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 RBM27Q9P2N5 1060 aaKnown RBP15.84■□□□□ 0.13
CSPG4-201ENST00000308508 MAP3K12Q12852 859 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 DZIP1Q86YF9 867 aaKnown RBP15.84■□□□□ 0.13
CSPG4-201ENST00000308508 TRIM47Q96LD4 638 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 SETDB1Q15047 1291 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 CAVIN4Q5BKX8 364 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 MKRN1Q9UHC7 482 aaKnown RBP15.84■□□□□ 0.13
CSPG4-201ENST00000308508 SYCP3Q8IZU3 236 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 GDPD2Q9HCC8 539 aa15.84■□□□□ 0.13
CSPG4-201ENST00000308508 PSMC4P43686 418 aa15.83■□□□□ 0.13
CSPG4-201ENST00000308508 SPTY2D1Q68D10 685 aaPredicted RBP15.83■□□□□ 0.13
CSPG4-201ENST00000308508 BOLA2Q9H3K6 86 aa15.83■□□□□ 0.13
CSPG4-201ENST00000308508 CWC25Q9NXE8 425 aaPredicted RBP15.83■□□□□ 0.13
CSPG4-201ENST00000308508 NFE2L2Q16236 605 aa15.83■□□□□ 0.13
CSPG4-201ENST00000308508 B4GALNT4Q76KP1 1039 aa15.83■□□□□ 0.13
CSPG4-201ENST00000308508 OGFRQ9NZT2 677 aa15.83■□□□□ 0.13
CSPG4-201ENST00000308508 UBA7P41226 1012 aa15.83■□□□□ 0.12
CSPG4-201ENST00000308508 IFIT1P09914 478 aaKnown RBP15.83■□□□□ 0.12
CSPG4-201ENST00000308508 ANO6Q4KMQ2 910 aa15.83■□□□□ 0.12
CSPG4-201ENST00000308508 LMBR1Q8WVP7 490 aa15.83■□□□□ 0.12
CSPG4-201ENST00000308508 ZKSCAN5Q9Y2L8 839 aa15.83■□□□□ 0.12
CSPG4-201ENST00000308508 ATP11AP98196 1134 aa15.83■□□□□ 0.12
CSPG4-201ENST00000308508 IFIT3O14879 490 aaKnown RBP15.83■□□□□ 0.12
CSPG4-201ENST00000308508 SYKP43405 635 aa15.83■□□□□ 0.12
CSPG4-201ENST00000308508 TPD52P55327 224 aaPredicted RBP15.82■□□□□ 0.12
CSPG4-201ENST00000308508 KRT83P78385 493 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 CFAP58Q5T655 872 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 FAM200AQ8TCP9 573 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 CCT2P78371 535 aaKnown RBP15.82■□□□□ 0.12
CSPG4-201ENST00000308508 PPFIBP2Q8ND30 876 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 EVI5LQ96CN4 794 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 RNF216Q9NWF9 866 aaPredicted RBP15.82■□□□□ 0.12
CSPG4-201ENST00000308508 HMG20BQ9P0W2 317 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 SPAG1Q07617 926 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 C10orf67Q8IYJ2 551 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 FAM76AQ8TAV0 307 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 SELENOSQ9BQE4 189 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 TFIP11Q9UBB9 837 aaKnown RBP15.82■□□□□ 0.12
CSPG4-201ENST00000308508 KRT86O43790 486 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 PPM1FP49593 454 aaPredicted RBP15.82■□□□□ 0.12
CSPG4-201ENST00000308508 STMN2Q93045 179 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 ZNF444Q8N0Y2 327 aaPredicted RBP15.82■□□□□ 0.12
CSPG4-201ENST00000308508 IFT74Q96LB3 600 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 PRAM1Q96QH2 718 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 PSMD1Q99460 953 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 NCOA2Q15596 1464 aa15.82■□□□□ 0.12
CSPG4-201ENST00000308508 SMARCA5O60264 1052 aaPredicted RBP15.81■□□□□ 0.12
CSPG4-201ENST00000308508 RANBP6O60518 1105 aaKnown RBP15.81■□□□□ 0.12
CSPG4-201ENST00000308508 ESCO1Q5FWF5 840 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 AEBP2Q6ZN18 517 aaPredicted RBP15.81■□□□□ 0.12
CSPG4-201ENST00000308508 HDXQ7Z353 690 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 GNAT3A8MTJ3 354 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 TMPOP42166 694 aaKnown RBP15.81■□□□□ 0.12
CSPG4-201ENST00000308508 DNAJC21Q5F1R6 531 aaKnown RBP15.81■□□□□ 0.12
CSPG4-201ENST00000308508 SARNPP82979 210 aaKnown RBP15.81■□□□□ 0.12
CSPG4-201ENST00000308508 ERICH3Q5RHP9 1530 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 ZEB2O60315 1214 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 GIMAP6Q6P9H5 292 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 CCDC174Q6PII3 467 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 CRACR2BQ8N4Y2 399 aaPredicted RBP15.81■□□□□ 0.12
CSPG4-201ENST00000308508 ABCC11Q96J66 1382 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 SYT1P21579 422 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 KCNG4Q8TDN1 519 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 ALDH3A1P30838 453 aa15.81■□□□□ 0.12
CSPG4-201ENST00000308508 SUPT6HQ7KZ85 1726 aaKnown RBP15.8■□□□□ 0.12
CSPG4-201ENST00000308508 IDEP14735 1019 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 IARSP41252 1262 aaKnown RBP15.8■□□□□ 0.12
CSPG4-201ENST00000308508 CFAP70Q5T0N1 1121 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 USP37Q86T82 979 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 SMAP1Q8IYB5 467 aaPredicted RBP15.8■□□□□ 0.12
CSPG4-201ENST00000308508 RPUSD2Q8IZ73 545 aaKnown RBP15.8■□□□□ 0.12
CSPG4-201ENST00000308508 LUC7L2Q9Y383 392 aaKnown RBP15.8■□□□□ 0.12
CSPG4-201ENST00000308508 KRT13P13646 458 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 JAKMIP2Q96AA8 810 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 CDK19Q9BWU1 502 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 PUF60Q9UHX1 559 aaKnown RBP15.8■□□□□ 0.12
CSPG4-201ENST00000308508 BMP15O95972 392 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 BMP2KLQ5H9B9 411 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 ISM2Q6H9L7 571 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 CCDC50Q8IVM0 306 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 CCDC63Q8NA47 563 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 ZSCAN22P10073 491 aaPredicted RBP15.8■□□□□ 0.12
CSPG4-201ENST00000308508 VAV2P52735 878 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 KIF5AQ12840 1032 aa15.8■□□□□ 0.12
CSPG4-201ENST00000308508 CACNA2D3Q8IZS8 1091 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 CCDC82Q8N4S0 544 aa15.79■□□□□ 0.12
CSPG4-201ENST00000308508 SPAG5Q96R06 1193 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms