RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 DNAAF4Q8WXU2 420 aa13□□□□□ -0.33
PTPN4-201ENST00000263708 SELENOSQ9BQE4 189 aa13□□□□□ -0.33
PTPN4-201ENST00000263708 RNF216Q9NWF9 866 aaPredicted RBP13□□□□□ -0.33
PTPN4-201ENST00000263708 RRS1Q15050 365 aaKnown RBP13□□□□□ -0.33
PTPN4-201ENST00000263708 FSIP1Q8NA03 581 aa13□□□□□ -0.33
PTPN4-201ENST00000263708 CDCA7LQ96GN5 454 aa13□□□□□ -0.33
PTPN4-201ENST00000263708 MIS18AQ9NYP9 233 aa13□□□□□ -0.33
PTPN4-201ENST00000263708 TOP2AP11388 1531 aaKnown RBP13□□□□□ -0.33
PTPN4-201ENST00000263708 KIF3CO14782 793 aa13□□□□□ -0.33
PTPN4-201ENST00000263708 NAA25Q14CX7 972 aa13□□□□□ -0.33
PTPN4-201ENST00000263708 TTF1Q15361 905 aaPredicted RBP13□□□□□ -0.33
PTPN4-201ENST00000263708 MROH2BQ7Z745 1585 aa13□□□□□ -0.33
PTPN4-201ENST00000263708 MPRIPQ6WCQ1 1025 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 SEPT14Q6ZU15 432 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 MAK16Q9BXY0 300 aaKnown RBP12.99□□□□□ -0.33
PTPN4-201ENST00000263708 FEZ2Q9UHY8 353 aaPredicted RBP12.99□□□□□ -0.33
PTPN4-201ENST00000263708 SMIM23A6NLE4 172 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 CCDC65Q8IXS2 484 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 PDIA4P13667 645 aaKnown RBP12.99□□□□□ -0.33
PTPN4-201ENST00000263708 TRIM47Q96LD4 638 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 AKNAD1Q5T1N1 836 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 CUL4BQ13620 913 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 RASA3Q14644 834 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 IMPG2Q9BZV3 1241 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 TSPY2A6NKD2 308 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 PLCB3Q01970 1234 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 CEP83Q9Y592 693 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 STAC3Q96MF2 364 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 EXOC6BQ9Y2D4 811 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 CCDC7Q96M83 1385 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 USP37Q86T82 979 aa12.99□□□□□ -0.33
PTPN4-201ENST00000263708 ESPNB1AK53 854 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 SNW1Q13573 536 aaKnown RBP12.98□□□□□ -0.33
PTPN4-201ENST00000263708 STX1AQ16623 288 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 RSPH3Q86UC2 560 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 GNAT3A8MTJ3 354 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 SARNPP82979 210 aaKnown RBP12.98□□□□□ -0.33
PTPN4-201ENST00000263708 PDE4BQ07343 736 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 UBA7P41226 1012 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 ZC3H6P61129 1189 aaKnown RBP12.98□□□□□ -0.33
PTPN4-201ENST00000263708 ERCC3P19447 782 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 ATP2A1O14983 1001 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 ADAMTS2O95450 1211 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 ARID5AQ03989 594 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 TMEM67Q5HYA8 995 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 ERMNQ8TAM6 284 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 BIN2Q9UBW5 565 aaPredicted RBP12.98□□□□□ -0.33
PTPN4-201ENST00000263708 FAM169AQ9Y6X4 670 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 TRMT112Q9UI30 125 aaKnown RBP12.98□□□□□ -0.33
PTPN4-201ENST00000263708 RPGRIP1LQ68CZ1 1315 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 CTAGE5O15320 804 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 SCAND2PQ9GZW5 306 aaPredicted RBP12.98□□□□□ -0.33
PTPN4-201ENST00000263708 STMN4Q9H169 189 aaPredicted RBP12.98□□□□□ -0.33
PTPN4-201ENST00000263708 EHBP1Q8NDI1 1231 aa12.98□□□□□ -0.33
PTPN4-201ENST00000263708 SMARCA5O60264 1052 aaPredicted RBP12.97□□□□□ -0.33
PTPN4-201ENST00000263708 TRIM7Q9C029 511 aa12.97□□□□□ -0.33
PTPN4-201ENST00000263708 GABPAQ06546 454 aa12.97□□□□□ -0.33
PTPN4-201ENST00000263708 HMGB1P09429 215 aaKnown RBP12.97□□□□□ -0.33
PTPN4-201ENST00000263708 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.97□□□□□ -0.33
PTPN4-201ENST00000263708 PPP4R3BQ5MIZ7 849 aa12.97□□□□□ -0.33
PTPN4-201ENST00000263708 BAG3O95817 575 aa12.97□□□□□ -0.33
PTPN4-201ENST00000263708 MVPQ14764 893 aaKnown RBP12.97□□□□□ -0.33
PTPN4-201ENST00000263708 CEP120Q8N960 986 aa12.97□□□□□ -0.33
PTPN4-201ENST00000263708 WDR66Q8TBY9 1149 aa12.97□□□□□ -0.33
PTPN4-201ENST00000263708 KIAA1524Q8TCG1 905 aa12.97□□□□□ -0.33
PTPN4-201ENST00000263708 KIF1BPQ96EK5 621 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 LARP6Q9BRS8 491 aaKnown RBP12.96□□□□□ -0.33
PTPN4-201ENST00000263708 TCHPQ9BT92 498 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 ERCC5P28715 1186 aaPredicted RBP12.96□□□□□ -0.33
PTPN4-201ENST00000263708 FAM184BQ9ULE4 1060 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 FAM13AO94988 1023 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 BRD4O60885 1362 aaPredicted RBP12.96□□□□□ -0.33
PTPN4-201ENST00000263708 OSCARQ8IYS5 282 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 CCDC77Q9BR77 488 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 CALM1P0DP23 149 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 CALM2P0DP24 149 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 CALM3P0DP25 149 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 STAT6P42226 847 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 GSDMDP57764 484 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 CCDC114Q96M63 670 aa12.96□□□□□ -0.33
PTPN4-201ENST00000263708 LRRC27Q9C0I9 530 aa12.96□□□□□ -0.34
PTPN4-201ENST00000263708 GTF2A1P52655 376 aaPredicted RBP12.96□□□□□ -0.34
PTPN4-201ENST00000263708 RAB11FIP4Q86YS3 637 aa12.96□□□□□ -0.34
PTPN4-201ENST00000263708 CACYBPQ9HB71 228 aaKnown RBP12.96□□□□□ -0.34
PTPN4-201ENST00000263708 CCDC25Q86WR0 208 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 MICU3Q86XE3 530 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 SEC62Q99442 399 aaKnown RBP12.95□□□□□ -0.34
PTPN4-201ENST00000263708 CABP1Q9NZU7 370 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 PPP2R1AP30153 589 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 ATRIPQ8WXE1 791 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 SLC26A6Q9BXS9 759 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 AKR1B10O60218 316 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 RAB11FIP3O75154 756 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 PTGS1P23219 599 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 CCDC89Q8N998 374 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 ATP2A2P16615 1042 aaKnown RBP12.95□□□□□ -0.34
PTPN4-201ENST00000263708 UAP1Q16222 522 aaPredicted RBP12.95□□□□□ -0.34
PTPN4-201ENST00000263708 ZBTB9Q96C00 473 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 SPAG5Q96R06 1193 aa12.95□□□□□ -0.34
PTPN4-201ENST00000263708 MX1P20591 662 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms