RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 RHPN1Q8TCX5 695 aa16.16■□□□□ 0.18
LDLR-201ENST00000252444 PHAXQ9H814 394 aaKnown RBP16.16■□□□□ 0.18
LDLR-201ENST00000252444 PDRG1Q9NUG6 133 aa16.16■□□□□ 0.18
LDLR-201ENST00000252444 CCNL1Q9UK58 526 aaPredicted RBP16.16■□□□□ 0.18
LDLR-201ENST00000252444 PLCB2Q00722 1185 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 TTC22Q5TAA0 569 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 SOGA3Q5TF21 947 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 TAOK2Q9UL54 1235 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 GOLGA6L19H0YKK7 550 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 BAG6P46379 1132 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 NEK4P51957 841 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 EIF4A1P60842 406 aaKnown RBP16.15■□□□□ 0.18
LDLR-201ENST00000252444 EHMT1Q9H9B1 1298 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 NIP7Q9Y221 180 aaKnown RBP eCLIP16.15■□□□□ 0.18
LDLR-201ENST00000252444 KIF1AQ12756 1690 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 CEP131Q9UPN4 1083 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 ADGRB1O14514 1584 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 HMGN5P82970 282 aaKnown RBP16.15■□□□□ 0.18
LDLR-201ENST00000252444 TPD52L1Q16890 204 aaPredicted RBP16.15■□□□□ 0.18
LDLR-201ENST00000252444 FAM196AQ6ZSG2 479 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 EXOC6BQ9Y2D4 811 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 F6X3S4 739 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 CNNM2Q9H8M5 875 aa16.15■□□□□ 0.18
LDLR-201ENST00000252444 DNTTIP2Q5QJE6 756 aaKnown RBP16.14■□□□□ 0.17
LDLR-201ENST00000252444 CCDC43Q96MW1 224 aaKnown RBP16.14■□□□□ 0.17
LDLR-201ENST00000252444 DCTPP1Q9H773 170 aa16.14■□□□□ 0.17
LDLR-201ENST00000252444 DDX49Q9Y6V7 483 aaKnown RBP16.14■□□□□ 0.17
LDLR-201ENST00000252444 PDE8AO60658 829 aa16.14■□□□□ 0.17
LDLR-201ENST00000252444 TSR1Q2NL82 804 aaKnown RBP16.14■□□□□ 0.17
LDLR-201ENST00000252444 UNC5CLQ8IV45 518 aa16.14■□□□□ 0.17
LDLR-201ENST00000252444 PLEKHF1Q96S99 279 aa16.14■□□□□ 0.17
LDLR-201ENST00000252444 CRNKL1Q9BZJ0 848 aaKnown RBP16.14■□□□□ 0.17
LDLR-201ENST00000252444 SH3TC1Q8TE82 1336 aa16.14■□□□□ 0.17
LDLR-201ENST00000252444 ATP2B3Q16720 1220 aa16.14■□□□□ 0.17
LDLR-201ENST00000252444 TMED8Q6PL24 325 aaPredicted RBP16.14■□□□□ 0.17
LDLR-201ENST00000252444 TMTC2Q8N394 836 aa16.13■□□□□ 0.17
LDLR-201ENST00000252444 NAPBQ9H115 298 aa16.13■□□□□ 0.17
LDLR-201ENST00000252444 IDH1O75874 414 aaKnown RBP16.13■□□□□ 0.17
LDLR-201ENST00000252444 HLA-DOAP06340 250 aa16.13■□□□□ 0.17
LDLR-201ENST00000252444 USP5P45974 858 aa16.13■□□□□ 0.17
LDLR-201ENST00000252444 PNPLA6Q8IY17 1366 aa16.13■□□□□ 0.17
LDLR-201ENST00000252444 MYO1BO43795 1136 aa16.13■□□□□ 0.17
LDLR-201ENST00000252444 IQCA1Q86XH1 822 aa16.12■□□□□ 0.17
LDLR-201ENST00000252444 CCDC12Q8WUD4 166 aaPredicted RBP16.12■□□□□ 0.17
LDLR-201ENST00000252444 ZNF335Q9H4Z2 1342 aaPredicted RBP16.12■□□□□ 0.17
LDLR-201ENST00000252444 IL1RAPL2Q9NP60 686 aa16.12■□□□□ 0.17
LDLR-201ENST00000252444 PDE4BQ07343 736 aa16.12■□□□□ 0.17
LDLR-201ENST00000252444 RBM27Q9P2N5 1060 aaKnown RBP16.12■□□□□ 0.17
LDLR-201ENST00000252444 VPS37CA5D8V6 355 aaPredicted RBP16.11■□□□□ 0.17
LDLR-201ENST00000252444 IRS4O14654 1257 aaPredicted RBP16.11■□□□□ 0.17
LDLR-201ENST00000252444 ZBTB40Q9NUA8 1239 aa16.11■□□□□ 0.17
LDLR-201ENST00000252444 DACH1Q9UI36 760 aa16.11■□□□□ 0.17
LDLR-201ENST00000252444 CFAP45Q9UL16 551 aa16.11■□□□□ 0.17
LDLR-201ENST00000252444 MROH5Q6ZUA9 1318 aa16.11■□□□□ 0.17
LDLR-201ENST00000252444 KRT23Q9C075 422 aa16.11■□□□□ 0.17
LDLR-201ENST00000252444 BICD2Q8TD16 824 aa16.11■□□□□ 0.17
LDLR-201ENST00000252444 RBM5P52756 815 aaKnown RBP eCLIP16.1■□□□□ 0.17
LDLR-201ENST00000252444 BECN2A8MW95 431 aa16.1■□□□□ 0.17
LDLR-201ENST00000252444 NUTM1Q86Y26 1132 aa16.1■□□□□ 0.17
LDLR-201ENST00000252444 PYM1Q9BRP8 204 aaKnown RBP16.1■□□□□ 0.17
LDLR-201ENST00000252444 DENND2AQ9ULE3 1009 aa16.1■□□□□ 0.17
LDLR-201ENST00000252444 GPTP24298 496 aa16.1■□□□□ 0.17
LDLR-201ENST00000252444 HOOK2Q96ED9 719 aa16.1■□□□□ 0.17
LDLR-201ENST00000252444 CRB1P82279 1406 aa16.1■□□□□ 0.17
LDLR-201ENST00000252444 CEP85Q6P2H3 762 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 SMC5Q8IY18 1101 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 ABCC4O15439 1325 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 POLR3DP05423 398 aaPredicted RBP16.09■□□□□ 0.17
LDLR-201ENST00000252444 KIF5BP33176 963 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 SLC39A6Q13433 755 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 PDE6BP35913 854 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 ZNF213O14771 459 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 NT5C2P49902 561 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 IKQ13123 557 aaPredicted RBP16.09■□□□□ 0.17
LDLR-201ENST00000252444 ACSBG1Q96GR2 724 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 TFCP2L1Q9NZI6 479 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 CNBD1Q8NA66 436 aa16.09■□□□□ 0.17
LDLR-201ENST00000252444 SASS6Q6UVJ0 657 aa16.08■□□□□ 0.17
LDLR-201ENST00000252444 CWC27Q6UX04 472 aaKnown RBP16.08■□□□□ 0.17
LDLR-201ENST00000252444 IL6STP40189 918 aaPredicted RBP16.08■□□□□ 0.16
LDLR-201ENST00000252444 OLFM4Q6UX06 510 aa16.08■□□□□ 0.16
LDLR-201ENST00000252444 JAKMIP1Q96N16 626 aaKnown RBP16.08■□□□□ 0.16
LDLR-201ENST00000252444 LMBR1LQ6UX01 489 aa16.07■□□□□ 0.16
LDLR-201ENST00000252444 TRMT2AQ8IZ69 625 aaKnown RBP16.07■□□□□ 0.16
LDLR-201ENST00000252444 PPP1R1BQ9UD71 204 aaPredicted RBP16.07■□□□□ 0.16
LDLR-201ENST00000252444 GNPATO15228 680 aa16.07■□□□□ 0.16
LDLR-201ENST00000252444 RAD21O60216 631 aa16.07■□□□□ 0.16
LDLR-201ENST00000252444 CLSTN1O94985 981 aa16.07■□□□□ 0.16
LDLR-201ENST00000252444 ALDH1B1P30837 517 aa16.07■□□□□ 0.16
LDLR-201ENST00000252444 GNAQP50148 359 aa16.07■□□□□ 0.16
LDLR-201ENST00000252444 ZNF444Q8N0Y2 327 aaPredicted RBP16.07■□□□□ 0.16
LDLR-201ENST00000252444 CRACR2BQ8N4Y2 399 aaPredicted RBP16.07■□□□□ 0.16
LDLR-201ENST00000252444 ERVV-1B6SEH8 477 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 C6orf229H3BNL8 230 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 MEIS3Q99687 375 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 HELLSQ9NRZ9 838 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 USP19O94966 1318 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 ATP5J2-PTCD1G3V325 749 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 IGSF3O75054 1194 aa16.06■□□□□ 0.16
LDLR-201ENST00000252444 GIGYF1O75420 1035 aaPredicted RBP16.06■□□□□ 0.16
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