RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 CEP135Q66GS9 1140 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 INTS4Q96HW7 963 aaKnown RBP5.39□□□□□ -1.55
VPS13C-201ENST00000249837 SMTNL1A8MU46 457 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 AMOTQ4VCS5 1084 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 CCDC69A6NI79 296 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 SLC3A2P08195 630 aaKnown RBP5.39□□□□□ -1.55
VPS13C-201ENST00000249837 METTL24Q5JXM2 366 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 OTUD7BQ6GQQ9 843 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 AOPEPQ8N6M6 819 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 SNX14Q9Y5W7 946 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 ERBB4Q15303 1308 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 KLHL10Q6JEL2 608 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 CCDC82Q8N4S0 544 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 UBXN4Q92575 508 aa5.39□□□□□ -1.55
VPS13C-201ENST00000249837 GRM8O00222 908 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 CHRNA2Q15822 529 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 TRIM22Q8IYM9 498 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 PLXNC1O60486 1568 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 IPO7O95373 1038 aaKnown RBP5.38□□□□□ -1.55
VPS13C-201ENST00000249837 HSP90AA4PQ58FG1 418 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 PRDM11Q9NQV5 511 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 Q6ZUG5 572 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 LUZP1Q86V48 1076 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 TNRQ92752 1358 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 SOS1Q07889 1333 aaPredicted RBP5.38□□□□□ -1.55
VPS13C-201ENST00000249837 BRD1O95696 1058 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 ANKLE2Q86XL3 938 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 FAM200AQ8TCP9 573 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 TOP1P11387 765 aaKnown RBP5.38□□□□□ -1.55
VPS13C-201ENST00000249837 APOBRQ0VD83 1088 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 UNC5CLQ8IV45 518 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 KCNH5Q8NCM2 988 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 ZSWIM4Q9H7M6 989 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 LGR6Q9HBX8 967 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 PRIMPOLQ96LW4 560 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 TSPOAP1O95153 1857 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 KCNQ3O43525 872 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 JAK2O60674 1132 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.38□□□□□ -1.551e-6■■■□□ 18.9
VPS13C-201ENST00000249837 POGZQ7Z3K3 1410 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 MINDY4BA8MYZ0 360 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 RIOK3O14730 519 aaKnown RBP5.38□□□□□ -1.55
VPS13C-201ENST00000249837 NAP1L1P55209 391 aaKnown RBP5.38□□□□□ -1.55
VPS13C-201ENST00000249837 KLHDC4Q8TBB5 520 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 CPLX3Q8WVH0 158 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 CCDC171Q6TFL3 1326 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 SGSM2O43147 1006 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 SKILP12757 684 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 CCDC70Q6NSX1 233 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 TRPM2O94759 1503 aa5.38□□□□□ -1.55
VPS13C-201ENST00000249837 IMMTQ16891 758 aaKnown RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 NCBP3Q53F19 620 aaKnown RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 HSP90AB3PQ58FF7 597 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 KLF18A0A0U1RQI7 1052 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 CBFA2T2O43439 604 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 NDUFB9Q9Y6M9 179 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 RAD21O60216 631 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 MTMR6Q9Y217 621 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 TET3O43151 1660 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 QRICH2Q9H0J4 1663 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 ERCC6L2Q5T890 1561 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 KIF2AO00139 706 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 SART3Q15020 963 aaKnown RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 EDC3Q96F86 508 aaKnown RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 BICC1Q9H694 974 aaKnown RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 CCP110O43303 1012 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 ZNF75DP51815 510 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 HSP90B2PQ58FF3 399 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 ERCC4Q92889 916 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 TTC21AQ8NDW8 1320 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 ALDH1L1O75891 902 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 LIG1P18858 919 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 LMOD1P29536 600 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 COPS6Q7L5N1 327 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 CCDC47Q96A33 483 aaKnown RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 NEK1Q96PY6 1258 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 NEMFO60524 1076 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 PDIA4P13667 645 aaKnown RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 RUFY3Q7L099 469 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 RAD50Q92878 1312 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 SBNO2Q9Y2G9 1366 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 CDKL5O76039 1030 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 MICU3Q86XE3 530 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 CCDC94Q9BW85 323 aaPredicted RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 CGNQ9P2M7 1197 aaKnown RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 MAP3K4Q9Y6R4 1608 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 IL17REQ8NFR9 667 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 CBX8Q9HC52 389 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 CCDC66A2RUB6 948 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 IFIT3O14879 490 aaKnown RBP5.37□□□□□ -1.55
VPS13C-201ENST00000249837 CTAGE5O15320 804 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 E9PCH4 1651 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 MAP3K5Q99683 1374 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 ZNF853P0CG23 659 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 FAM193AP78312 1265 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 PTH1RQ03431 593 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 RAI14Q9P0K7 980 aa5.37□□□□□ -1.55
VPS13C-201ENST00000249837 UNC13BO14795 1591 aa5.36□□□□□ -1.55
VPS13C-201ENST00000249837 ZCCHC11Q5TAX3 1644 aaKnown RBP5.36□□□□□ -1.55
VPS13C-201ENST00000249837 XBP1P17861 261 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms