RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 STK3Q13188 491 aa17.16■□□□□ 0.34
PTPRA-201ENST00000216877 TMC6Q7Z403 805 aa17.16■□□□□ 0.34
PTPRA-201ENST00000216877 CCDC91Q7Z6B0 441 aa17.16■□□□□ 0.34
PTPRA-201ENST00000216877 ZNF622Q969S3 477 aaKnown RBP eCLIP17.16■□□□□ 0.345e-6■■□□□ 11.7
PTPRA-201ENST00000216877 SLFNL1Q499Z3 407 aa17.16■□□□□ 0.34
PTPRA-201ENST00000216877 DCTN1Q14203 1278 aa17.16■□□□□ 0.34
PTPRA-201ENST00000216877 MUM1L1Q5H9M0 696 aa17.16■□□□□ 0.34
PTPRA-201ENST00000216877 SRRTQ9BXP5 876 aaKnown RBP17.16■□□□□ 0.34
PTPRA-201ENST00000216877 KIF2AO00139 706 aaPredicted RBP17.15■□□□□ 0.34
PTPRA-201ENST00000216877 CCDC172P0C7W6 258 aa17.15■□□□□ 0.34
PTPRA-201ENST00000216877 H2AFXP16104 143 aaPredicted RBP17.15■□□□□ 0.34
PTPRA-201ENST00000216877 ANKRD20A12PQ8NF67 263 aa17.15■□□□□ 0.34
PTPRA-201ENST00000216877 SPG7Q9UQ90 795 aa17.15■□□□□ 0.34
PTPRA-201ENST00000216877 SFPQP23246 707 aaKnown RBP eCLIP17.15■□□□□ 0.34
PTPRA-201ENST00000216877 FOXR1Q6PIV2 292 aa17.15■□□□□ 0.34
PTPRA-201ENST00000216877 ANKRD44Q8N8A2 993 aa17.15■□□□□ 0.34
PTPRA-201ENST00000216877 EIF3CLB5ME19 914 aaKnown RBP17.14■□□□□ 0.34
PTPRA-201ENST00000216877 ACTN2P35609 894 aa17.14■□□□□ 0.34
PTPRA-201ENST00000216877 C8orf58Q8NAV2 365 aa17.14■□□□□ 0.34
PTPRA-201ENST00000216877 EIF3CQ99613 913 aaKnown RBP17.14■□□□□ 0.34
PTPRA-201ENST00000216877 NEMFO60524 1076 aa17.14■□□□□ 0.33
PTPRA-201ENST00000216877 MAP2K2P36507 400 aa17.14■□□□□ 0.33
PTPRA-201ENST00000216877 TCEANC2Q96MN5 208 aa17.14■□□□□ 0.33
PTPRA-201ENST00000216877 CABP2Q9NPB3 220 aa17.14■□□□□ 0.33
PTPRA-201ENST00000216877 BRPF1P55201 1214 aaPredicted RBP17.14■□□□□ 0.33
PTPRA-201ENST00000216877 DHX8Q14562 1220 aaKnown RBP17.14■□□□□ 0.33
PTPRA-201ENST00000216877 CEP85Q6P2H3 762 aa17.14■□□□□ 0.33
PTPRA-201ENST00000216877 PLA2G4DQ86XP0 818 aa17.14■□□□□ 0.33
PTPRA-201ENST00000216877 RABEP2Q9H5N1 569 aa17.14■□□□□ 0.33
PTPRA-201ENST00000216877 BRMS1Q9HCU9 246 aa17.14■□□□□ 0.33
PTPRA-201ENST00000216877 CLTCQ00610 1675 aaKnown RBP17.14■□□□□ 0.33
PTPRA-201ENST00000216877 NR1I2O75469 434 aa17.13■□□□□ 0.33
PTPRA-201ENST00000216877 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.13■□□□□ 0.33
PTPRA-201ENST00000216877 RPAP2Q8IXW5 612 aaPredicted RBP17.13■□□□□ 0.33
PTPRA-201ENST00000216877 CXorf56Q9H5V9 222 aa17.13■□□□□ 0.33
PTPRA-201ENST00000216877 CHMLP26374 656 aa17.13■□□□□ 0.33
PTPRA-201ENST00000216877 TMEM87AQ8NBN3 555 aa17.13■□□□□ 0.33
PTPRA-201ENST00000216877 JAKMIP1Q96N16 626 aaKnown RBP17.13■□□□□ 0.33
PTPRA-201ENST00000216877 SCAF11Q99590 1463 aaKnown RBP17.13■□□□□ 0.33
PTPRA-201ENST00000216877 HSP90B2PQ58FF3 399 aa17.13■□□□□ 0.33
PTPRA-201ENST00000216877 CWC27Q6UX04 472 aaKnown RBP17.13■□□□□ 0.33
PTPRA-201ENST00000216877 SPATA31D1Q6ZQQ2 1576 aa17.13■□□□□ 0.33
PTPRA-201ENST00000216877 ORC3Q9UBD5 711 aaPredicted RBP17.12■□□□□ 0.33
PTPRA-201ENST00000216877 MTMR6Q9Y217 621 aa17.12■□□□□ 0.33
PTPRA-201ENST00000216877 LARGE1O95461 756 aa17.12■□□□□ 0.33
PTPRA-201ENST00000216877 NYAP1Q6ZVC0 841 aa17.12■□□□□ 0.33
PTPRA-201ENST00000216877 NPATQ14207 1427 aa17.12■□□□□ 0.33
PTPRA-201ENST00000216877 IVLP07476 585 aa17.12■□□□□ 0.33
PTPRA-201ENST00000216877 NUTM1Q86Y26 1132 aa17.12■□□□□ 0.33
PTPRA-201ENST00000216877 YEATS2Q9ULM3 1422 aa17.12■□□□□ 0.33
PTPRA-201ENST00000216877 ATP2B1P20020 1258 aa17.11■□□□□ 0.33
PTPRA-201ENST00000216877 AOPEPQ8N6M6 819 aa17.11■□□□□ 0.33
PTPRA-201ENST00000216877 MAGEA9P43362 315 aa17.11■□□□□ 0.33
PTPRA-201ENST00000216877 PPM1EQ8WY54 764 aa17.11■□□□□ 0.33
PTPRA-201ENST00000216877 GNAI1P63096 354 aa17.11■□□□□ 0.33
PTPRA-201ENST00000216877 MBIPQ9NS73 344 aa17.11■□□□□ 0.33
PTPRA-201ENST00000216877 F6X3S4 739 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 DDX19AQ9NUU7 478 aaKnown RBP17.1■□□□□ 0.33
PTPRA-201ENST00000216877 SASH3O75995 380 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 MMP14P50281 582 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 C11orf57Q6ZUT1 292 aaPredicted RBP17.1■□□□□ 0.33
PTPRA-201ENST00000216877 RUFY3Q7L099 469 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 UNC5CLQ8IV45 518 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 PPP1R13BQ96KQ4 1090 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 SUFUQ9UMX1 484 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 RPAP1Q9BWH6 1393 aaPredicted RBP17.1■□□□□ 0.33
PTPRA-201ENST00000216877 PPFIA3O75145 1194 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 CDC37L1Q7L3B6 337 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 TDRD7Q8NHU6 1098 aaKnown RBP17.1■□□□□ 0.33
PTPRA-201ENST00000216877 DDX11Q96FC9 970 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 SDF4Q9BRK5 362 aa17.1■□□□□ 0.33
PTPRA-201ENST00000216877 FAM83GA6ND36 823 aa17.09■□□□□ 0.33
PTPRA-201ENST00000216877 H3BQV1 296 aa17.09■□□□□ 0.33
PTPRA-201ENST00000216877 ANAPC15P60006 121 aa17.09■□□□□ 0.33
PTPRA-201ENST00000216877 IFFO2Q5TF58 517 aa17.09■□□□□ 0.33
PTPRA-201ENST00000216877 HSP90B1P14625 803 aaKnown RBP17.09■□□□□ 0.33
PTPRA-201ENST00000216877 PTPN21Q16825 1174 aa17.09■□□□□ 0.33
PTPRA-201ENST00000216877 PDE11AQ9HCR9 933 aa17.09■□□□□ 0.33
PTPRA-201ENST00000216877 FAM53CQ9NYF3 392 aa17.09■□□□□ 0.33
PTPRA-201ENST00000216877 PPP2R5AQ15172 486 aa17.09■□□□□ 0.33
PTPRA-201ENST00000216877 TCHHQ07283 1943 aa17.08■□□□□ 0.33
PTPRA-201ENST00000216877 ATP6V1AP38606 617 aa17.08■□□□□ 0.33
PTPRA-201ENST00000216877 LIG3P49916 1009 aa17.08■□□□□ 0.33
PTPRA-201ENST00000216877 NECTIN2Q92692 538 aa17.08■□□□□ 0.33
PTPRA-201ENST00000216877 ADGRF5Q8IZF2 1346 aa17.08■□□□□ 0.32
PTPRA-201ENST00000216877 BIN1O00499 593 aa17.08■□□□□ 0.32
PTPRA-201ENST00000216877 GNG11P61952 73 aa17.08■□□□□ 0.32
PTPRA-201ENST00000216877 FBXO31Q5XUX0 539 aaPredicted RBP17.08■□□□□ 0.32
PTPRA-201ENST00000216877 ARHGAP45Q92619 1136 aa17.08■□□□□ 0.32
PTPRA-201ENST00000216877 LRRCC1Q9C099 1032 aa17.08■□□□□ 0.32
PTPRA-201ENST00000216877 RASEFQ8IZ41 740 aa17.08■□□□□ 0.32
PTPRA-201ENST00000216877 H0YHG0 523 aa17.07■□□□□ 0.32
PTPRA-201ENST00000216877 CCZ1BP86790 482 aa17.07■□□□□ 0.32
PTPRA-201ENST00000216877 CCZ1P86791 482 aaPredicted RBP17.07■□□□□ 0.32
PTPRA-201ENST00000216877 PDILTQ8N807 584 aa17.07■□□□□ 0.32
PTPRA-201ENST00000216877 PRPF40BQ6NWY9 871 aaKnown RBP17.07■□□□□ 0.32
PTPRA-201ENST00000216877 WWC2Q6AWC2 1192 aa17.07■□□□□ 0.32
PTPRA-201ENST00000216877 PHACTR3Q96KR7 559 aa17.07■□□□□ 0.32
PTPRA-201ENST00000216877 TBC1D8O95759 1140 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 CC2D1AQ6P1N0 951 aaPredicted RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms