RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	PWWP2B	Q6NUJ5	590 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	FRA10AC1	Q70Z53	315 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	KCTD9	Q7L273	389 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	RRM2B	Q7LG56	351 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	SPATA19	Q7Z5L4	167 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	CCDC25	Q86WR0	208 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	ZBED8	Q8IZ13	594 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	ADGRF3	Q8IZF5	1079 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	C2orf73	Q8N5S3	287 aa	Predicted RBP	4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	RBM15B	Q8NDT2	890 aa	Known RBP	4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	FBXO36	Q8NEA4	188 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	OR9A1P	Q8NGU1	263 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	OR56A3	Q8NH54	315 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	FAM45A	Q8TCE6	357 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	PYROXD1	Q8WU10	500 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	METTL21A	Q8WXB1	218 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	SGCD	Q92629	289 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	INPP5D	Q92835	1189 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	NCLN	Q969V3	563 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	RERG	Q96A58	199 aa	Predicted RBP	4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	INTS12	Q96CB8	462 aa	Known RBP	4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	ZNF501	Q96CX3	271 aa	Predicted RBP	4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	TMCO6	Q96DC7	493 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	WBP1	Q96G27	269 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	TPD52L3	Q96J77	140 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	BIRC8	Q96P09	236 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	NDN	Q99608	321 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	GPR21	Q99679	349 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	SELENOS	Q9BQE4	189 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	TPPP3	Q9BW30	176 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	NLN	Q9BYT8	704 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	PITPNM3	Q9BZ71	974 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	FAM129A	Q9BZQ8	928 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	TRIM2	Q9C040	744 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	LHX9	Q9NQ69	397 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	CNIH4	Q9P003	139 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	SEMA5B	Q9P283	1151 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	MTRF1L	Q9UGC7	380 aa	Known RBP	4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	FBXO5	Q9UKT4	447 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	ZDHHC8	Q9ULC8	765 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	PLCL2	Q9UPR0	1127 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	RUVBL2	Q9Y230	463 aa	Known RBP	4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	SNX24	Q9Y343	169 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	NFS1	Q9Y697	457 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	ACACB	O00763	2458 aa		4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	GOLGA4	Q13439	2230 aa	Known RBP	4.38	□□□□□ -1.71
ZNF540-204	ENST00000586792	ZFHX4	Q86UP3	3567 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	ASXL3	Q9C0F0	2248 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	LOC101059948	A0A1B0GTJ6	334 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	LOC102723971	A0A1B0GUV8	181 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	FAM90A18P	A6NE21	464 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	FAM90A16P	A6NEW6	464 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792		A6NL46	340 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	FAM90A9P	A6NNJ1	464 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	FAM90A5P	A8MXJ8	464 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	POC1B-GALNT4	F8VUJ3	575 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792		J3KTA2	159 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	EIF3H	O15372	352 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	ZNF749	O43361	778 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	PSIP1	O75475	530 aa	Known RBP	4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	BANF1	O75531	89 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	FAM90A15P	P0C7V4	464 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	FAM90A14P	P0C7W9	464 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	ITGAX	P20702	1163 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	MYF6	P23409	242 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	AHCY	P23526	432 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	MST1	P26927	711 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	TTK	P33981	857 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	PHB	P35232	272 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	RPL21	P46778	160 aa	Known RBP	4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	PLTP	P55058	493 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	WNT3	P56703	355 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	CARD18	P57730	90 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	KRTAP10-5	P60370	271 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	DCD	P81605	110 aa	Known RBP	4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	SRSF6	Q13247	344 aa	Known RBP	4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	LY6D	Q14210	128 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	ARHGAP19	Q14CB8	494 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	WHAMMP3	Q1A5X7	153 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	DEFB109B	Q30KR1	87 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	TBRG1	Q3YBR2	411 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	SPATA46	Q5T0L3	261 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	UBAP2	Q5T6F2	1119 aa	Known RBP	4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	C10orf25	Q5T742	122 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	IRAK1BP1	Q5VVH5	260 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	CDC73	Q6P1J9	531 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	CORO6	Q6QEF8	472 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	METAP1D	Q6UB28	335 aa	Predicted RBP	4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	RBPMS2	Q6ZRY4	209 aa	Known RBP	4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	CDHR3	Q6ZTQ4	885 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	TIPARP	Q7Z3E1	657 aa	Known RBP	4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	PIWIL4	Q7Z3Z4	852 aa	Known RBP	4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	SYVN1	Q86TM6	617 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	SLC26A11	Q86WA9	606 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	FAM90A1	Q86YD7	464 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	RAB43	Q86YS6	212 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	CTAGE3P	Q8IX95	158 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	PHC2	Q8IXK0	858 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	CPNE9	Q8IYJ1	553 aa		4.37	□□□□□ -1.71
ZNF540-204	ENST00000586792	C10orf67	Q8IYJ2	551 aa		4.37	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms