RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 DLL3Q9NYJ7 618 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 FARSAQ9Y285 508 aaKnown RBP17.17■□□□□ 0.34
CLN3-206ENST00000360019 SLC9A8Q9Y2E8 581 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 TESMINQ9Y4I5 508 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 LRRC42Q9Y546 428 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 PTPRBP23467 1997 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 G3V2T6 193 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 SOCS6O14544 535 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 EI24O14681 340 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 TERTO14746 1132 aaKnown RBP17.17■□□□□ 0.34
CLN3-206ENST00000360019 RAD1O60671 282 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 RASAL1O95294 804 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 IL33O95760 270 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 RHCEP18577 417 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 F8A1P23610 371 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 PLAURQ03405 335 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 LAPTM4AQ15012 233 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 PDZK1Q5T2W1 519 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 RNF220Q5VTB9 566 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 TSPYL5Q86VY4 417 aaPredicted RBP17.17■□□□□ 0.34
CLN3-206ENST00000360019 ZDHHC13Q8IUH4 622 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 PRR22Q8IZ63 422 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 OR5K1Q8NHB7 308 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 BARD1Q99728 777 aaKnown RBP17.17■□□□□ 0.34
CLN3-206ENST00000360019 PIP5K1AQ99755 562 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 REEP1Q9H902 201 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 SAMHD1Q9Y3Z3 626 aaKnown RBP17.17■□□□□ 0.34
CLN3-206ENST00000360019 TMEM200CA6NKL6 621 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 STMND1H3BQB6 276 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 PCDH17O14917 1159 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 TPST2O60704 377 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 BCAS1O75363 584 aaPredicted RBP17.16■□□□□ 0.34
CLN3-206ENST00000360019 ATP12AP54707 1039 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 GANABQ14697 944 aaKnown RBP17.16■□□□□ 0.34
CLN3-206ENST00000360019 ZNF141Q15928 474 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 OTUD3Q5T2D3 398 aaPredicted RBP17.16■□□□□ 0.34
CLN3-206ENST00000360019 MRPL2Q5T653 305 aaKnown RBP17.16■□□□□ 0.34
CLN3-206ENST00000360019 SHQ1Q6PI26 577 aaKnown RBP17.16■□□□□ 0.34
CLN3-206ENST00000360019 C16orf47Q6ZP98 133 aaPredicted RBP17.16■□□□□ 0.34
CLN3-206ENST00000360019 STK32CQ86UX6 486 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 SVOPLQ8N434 492 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 OR11G2Q8NGC1 345 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 OR4C3Q8NH37 302 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 NUBPLQ8TB37 319 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 FLRT3Q9NZU0 649 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 KCND3Q9UK17 655 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 C15orf41Q9Y2V0 281 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 FAM32AQ9Y421 112 aaKnown RBP17.16■□□□□ 0.34
CLN3-206ENST00000360019 LYVE1Q9Y5Y7 322 aa17.16■□□□□ 0.34
CLN3-206ENST00000360019 A0A1W2PQ72 361 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 C7orf72A4D263 438 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 CDHR4A6H8M9 788 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 ADAMDEC1O15204 470 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 IGHEP01854 428 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 DNAJA1P31689 397 aaKnown RBP17.15■□□□□ 0.34
CLN3-206ENST00000360019 RPS15P62841 145 aaKnown RBP17.15■□□□□ 0.34
CLN3-206ENST00000360019 SPIBQ01892 262 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 DNASE1L3Q13609 305 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 TMPRSS7Q7RTY8 843 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 PPP1R32Q7Z5V6 425 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 GALNT15Q8N3T1 639 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 PACRGLQ8N7B6 248 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 ZNF614Q8N883 585 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 OR8K3Q8NH51 312 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 THAP3Q8WTV1 239 aaPredicted RBP17.15■□□□□ 0.34
CLN3-206ENST00000360019 PHF10Q8WUB8 498 aaKnown RBP17.15■□□□□ 0.34
CLN3-206ENST00000360019 DIO2Q92813 273 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 HSPBAP1Q96EW2 488 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 IMMP1LQ96LU5 166 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 VCXQ9H320 206 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 KLHL28Q9NXS3 571 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 RHCGQ9UBD6 479 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 SLC13A4Q9UKG4 626 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 ACAD8Q9UKU7 415 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 A4GNTQ9UNA3 340 aa17.15■□□□□ 0.34
CLN3-206ENST00000360019 CDRT15L2A8MXV6 281 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 GFRA3O60609 400 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 FPR1P21462 350 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 ABCD3P28288 659 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 DLSTP36957 453 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 CDH12P55289 794 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 EIPR1Q53HC9 387 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 DESI1Q6ICB0 168 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 SLC34A3Q8N130 599 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 OR4C15Q8NGM1 316 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 ELP5Q8TE02 316 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 TP53INP1Q96A56 240 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 ZNF597Q96LX8 424 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 ADOQ96SZ5 270 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 EPYCQ99645 322 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 PRR14Q9BWN1 585 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 ACER3Q9NUN7 267 aa17.14■□□□□ 0.34
CLN3-206ENST00000360019 LOC101059948A0A1B0GTJ6 334 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 C21orf140B9A014 251 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 TNFRSF11BO00300 401 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 DLGAP1O14490 977 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 TSPAN2O60636 221 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 ZNF354AO60765 605 aaPredicted RBP17.14■□□□□ 0.33
CLN3-206ENST00000360019 SLC34A2O95436 690 aa17.14■□□□□ 0.33
CLN3-206ENST00000360019 CELA2AP08217 269 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms