RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 AIF1LQ9BQI0 150 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 SEMA4CQ9C0C4 833 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 SIRT3Q9NTG7 399 aaPredicted RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 CCDC59Q9P031 241 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 SLC7A7Q9UM01 511 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 GTF2A1LQ9UNN4 478 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 PPIEQ9UNP9 301 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 KLK4Q9Y5K2 254 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 MDC1Q14676 2089 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 IDSB3KWA1 339 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 GABRPO00591 440 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 POLR1CO15160 346 aaPredicted RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 LYRM1O43325 122 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 CHST10O43529 356 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 EPPINO95925 133 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 SOD1P00441 154 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 PAICSP22234 425 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 PYCR1P32322 319 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 AGFG1P52594 562 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 WDR5P61964 334 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 EXOSC7Q15024 291 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 BCL2A1Q16548 175 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 DEFB110Q30KQ9 67 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 FAM209AQ5JX71 171 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 FAM46CQ5VWP2 391 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 ZNF770Q6IQ21 691 aaPredicted RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 FAM111BQ6SJ93 734 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 RNF44Q7L0R7 432 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 PARGQ86W56 976 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 NR2C2APQ86WQ0 139 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 SLC38A6Q8IZM9 456 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 NATD1Q8N6N6 113 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 OR52E4Q8NGH9 312 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 PATE1Q8WXA2 126 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 CNRIP1Q96F85 164 aaPredicted RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 PTCHD1Q96NR3 888 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 MCHR1Q99705 422 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 ENAMQ9NRM1 1142 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 RASD1Q9Y272 281 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 A0A1W2PR48 441 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 HYKKA2RU49 373 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 PITPNM1O00562 1244 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 MID1O15344 667 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 OR5F1O95221 314 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 UCHL1P09936 223 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 LIMS3P0CW19 117 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 LIMS4P0CW20 117 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 KCNJ5P48544 419 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 ARHGDIBP52566 201 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 AP2S1P53680 142 aaPredicted RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 COX10Q12887 443 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 SP140Q13342 867 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 TOR1AIP1Q5JTV8 583 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 SLC27A4Q6P1M0 643 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 KCTD12Q96CX2 325 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 ZNF354BQ96LW1 612 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 TMEM175Q9BSA9 504 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 IFT27Q9BW83 186 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 CDCA4Q9BXL8 241 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 OR2B2Q9GZK3 357 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 CD93Q9NPY3 652 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 LHX9Q9NQ69 397 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 HINT3Q9NQE9 182 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 C20orf141Q9NUB4 165 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 P2RX2Q9UBL9 471 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 GSTK1Q9Y2Q3 226 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 AK6Q9Y3D8 172 aaKnown RBP8.11□□□□□ -1.11
USP40-203ENST00000427112 INSL6Q9Y581 213 aa8.11□□□□□ -1.11
USP40-203ENST00000427112 SDK2Q58EX2 2172 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 PEX12O00623 359 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 CXCL3P19876 107 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 BSGP35613 385 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 PCBP3P57721 371 aaKnown RBP8.1□□□□□ -1.11
USP40-203ENST00000427112 ZNF783Q6ZMS7 281 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 GPR155Q7Z3F1 870 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 KLHDC8AQ8IYD2 350 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 VWA5B2Q8N398 1253 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 OR4M1Q8NGD0 313 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 SLC25A46Q96AG3 418 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 ZMYND19Q96E35 227 aaPredicted RBP8.1□□□□□ -1.11
USP40-203ENST00000427112 WDR89Q96FK6 387 aaPredicted RBP8.1□□□□□ -1.11
USP40-203ENST00000427112 DTD2Q96FN9 168 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 MRGPRX3Q96LB0 322 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 QRFPRQ96P65 431 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 INSM2Q96T92 566 aaPredicted RBP8.1□□□□□ -1.11
USP40-203ENST00000427112 PLCXD1Q9NUJ7 323 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 FREM2Q5SZK8 3169 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 SCN4AP35499 1836 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 ADAP00813 363 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 EIF4EP06730 217 aaKnown RBP8.1□□□□□ -1.11
USP40-203ENST00000427112 YES1P07947 543 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 FBXO45P0C2W1 286 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 ADRB3P13945 408 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 GIFP27352 417 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 SOX2P48431 317 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 OR12D2P58182 307 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 TFF2Q03403 129 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 TGM3Q08188 693 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 ERV3-1Q14264 604 aa8.1□□□□□ -1.11
USP40-203ENST00000427112 ENTPD8Q5MY95 495 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms