RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 CMIPQ8IY22 773 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 NEIL3Q8TAT5 605 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 ZNF587Q96SQ5 575 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-211ENST00000543710 SMOQ99835 787 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 SLC25A31Q9H0C2 315 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 OPA3Q9H6K4 179 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 CACFD1Q9UGQ2 172 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 PCDHGC4Q9Y5F7 938 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 CACNG2Q9Y698 323 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 RGPD2P0DJD1 1756 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 LOC285095A0A1B0GVY8 99 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 MASP2O00187 686 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 SEC14L5O43304 696 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 NIPSNAP2O75323 286 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 STSP08842 583 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 IFI30P13284 250 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 JUNBP17275 347 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-211ENST00000543710 CD34P28906 385 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 SRPXP78539 464 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 LRP8Q14114 963 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 TBCEQ15813 527 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-211ENST00000543710 FLYWCH1Q4VC44 716 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 GPRC6AQ5T6X5 926 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 STPG1Q5TH74 334 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 BPHLQ86WA6 291 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-211ENST00000543710 OR51D1Q8NGF3 324 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 DPF1Q92782 380 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 PEBP4Q96S96 227 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 PKP4Q99569 1192 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 TMEM168Q9H0V1 697 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 TAC3Q9UHF0 121 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 TMA7Q9Y2S6 64 aaKnown RBP7.41□□□□□ -1.22
VPS13D-211ENST00000543710 KIF13BQ9NQT8 1826 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 A8MVJ9 347 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 F5H5P2 479 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 PAHP00439 452 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 IFNA10P01566 189 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 IFNA4P05014 189 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 RPS17P08708 135 aaKnown RBP7.41□□□□□ -1.22
VPS13D-211ENST00000543710 PIRTP0C851 137 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 IL1RNP18510 177 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 AQP1P29972 269 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 GKP32189 559 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 DUSP7Q16829 419 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 OSTM1Q86WC4 334 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 CLIP4Q8N3C7 705 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 FGF11Q92914 225 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 GLYATL1Q969I3 302 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 CIDECQ96AQ7 238 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-211ENST00000543710 PRRC1Q96M27 445 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 TGM7Q96PF1 710 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 MROQ9BYG7 248 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 PCDHAC1Q9H158 963 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 HPF1Q9NWY4 346 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 OSER1Q9NX31 292 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 REV1Q9UBZ9 1251 aa7.41□□□□□ -1.22
VPS13D-211ENST00000543710 ZFR2Q9UPR6 939 aaKnown RBP7.41□□□□□ -1.22
VPS13D-211ENST00000543710 PTRH2Q9Y3E5 179 aaKnown RBP7.41□□□□□ -1.22
VPS13D-211ENST00000543710 FXYD6-FXYD2A0A087WZ82 144 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 J3KR12 359 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 CYB5BO43169 146 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 B4GALT2O60909 372 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 SDC3O75056 442 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 SEC14L2O76054 403 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 MTHFD2P13995 350 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 IL9P15248 144 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 IFNGR1P15260 489 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 RAB3BP20337 219 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 IL32P24001 234 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 EEF1A1P68104 462 aaKnown RBP7.4□□□□□ -1.22
VPS13D-211ENST00000543710 NKX3-2P78367 333 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 EEF1A2Q05639 463 aaKnown RBP7.4□□□□□ -1.22
VPS13D-211ENST00000543710 ST3GAL4Q11206 333 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 BNIP3Q12983 259 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 PMS2P3Q13401 168 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 GINS1Q14691 196 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 NSDHLQ15738 373 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 DEFB109BQ30KR1 87 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 EEF1A1P5Q5VTE0 462 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 TNFAIP8L2Q6P589 184 aaPredicted RBP7.4□□□□□ -1.22
VPS13D-211ENST00000543710 C6orf15Q6UXA7 325 aaPredicted RBP7.4□□□□□ -1.22
VPS13D-211ENST00000543710 NAPRTQ6XQN6 538 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 SPRED1Q7Z699 444 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 RETREG3Q86VR2 466 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 LACC1Q8IV20 430 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 Q8N402 240 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 STEAP2Q8NFT2 490 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 TIMD4Q96H15 378 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 FXYD6Q9H0Q3 95 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 TSPAN10Q9H1Z9 355 aaPredicted RBP7.4□□□□□ -1.22
VPS13D-211ENST00000543710 WDR45Q9Y484 360 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 D6RAR5 112 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 CDC7O00311 574 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 PLD2O14939 933 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 SULT1B1O43704 296 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 CDK1P06493 297 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 PROS1P07225 676 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 SLC35E2BP0CK96 405 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 FKBP2P26885 142 aaKnown RBP7.4□□□□□ -1.22
VPS13D-211ENST00000543710 WNT4P56705 351 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms