RNA–Protein interactions for RNA: ENST00000507459.5

CCHCR1-222, Transcript of coiled-coil alpha-helical rod protein 1, human

TSL 5

Gene CCHCR1, Length 582 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCHCR1-222	ENST00000507459	GABRA3	P34903	492 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	RPL3	P39023	403 aa	Known RBP	12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PTGDS	P41222	190 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	GAB1	Q13480	694 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	EFR3A	Q14156	821 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	WLS	Q5T9L3	541 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	CPTP	Q5TA50	214 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	TIGD3	Q6B0B8	471 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	XKRX	Q6PP77	449 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	RPRML	Q8N4K4	120 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	NUP43	Q8NFH3	380 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	TLCD1	Q96CP7	247 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SLC35A4	Q96G79	324 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	DMRTA2	Q96SC8	542 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	NUF2	Q9BZD4	464 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	AKTIP	Q9H8T0	292 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459		Q9N2J8	555 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	ACKR4	Q9NPB9	350 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	ACSS1	Q9NUB1	689 aa	Predicted RBP	12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	CBLC	Q9ULV8	474 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459	C15orf41	Q9Y2V0	281 aa		12.93	□□□□□ -0.34
CCHCR1-222	ENST00000507459		A0A1W2PRB8	838 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SNUPN	O95149	360 aa	Known RBP	12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PSMG1	O95456	288 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	G6PD	P11413	515 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	CYP4B1	P13584	511 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	ELAVL4	P26378	380 aa	Known RBP	12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	FRK	P42685	505 aa	Predicted RBP	12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PNLIPRP2	P54317	469 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PSPH	P78330	225 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	EMX2	Q04743	252 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PMPCA	Q10713	525 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	MAD2L1	Q13257	205 aa	Predicted RBP	12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SNTA1	Q13424	505 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	ART3	Q13508	389 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	CDSN	Q15517	529 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	DECR1	Q16698	335 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	CYP27C1	Q4G0S4	372 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SP5	Q6BEB4	398 aa	Predicted RBP	12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	TMEM211	Q6ICI0	200 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	TMEM81	Q6P7N7	255 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	MARVELD2	Q8N4S9	558 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	CEP70	Q8NHQ1	597 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	NEIL3	Q8TAT5	605 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	FBXO30	Q8TB52	745 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	GPR151	Q8TDV0	419 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PHF10	Q8WUB8	498 aa	Known RBP	12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PIK3R3	Q92569	461 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SLC9A6	Q92581	669 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SDCCAG3	Q96C92	435 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PRPF18	Q99633	342 aa	Known RBP	12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	LMF2	Q9BU23	707 aa	Known RBP	12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	C3orf14	Q9HBI5	128 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SERHL	Q9NQF3	203 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	NOP53	Q9NZM5	478 aa	Known RBP	12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SLC6A5	Q9Y345	797 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SNX8	Q9Y5X2	465 aa		12.92	□□□□□ -0.34
CCHCR1-222	ENST00000507459	GXYLT2	A0PJZ3	443 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	FIGNL2	A6NMB9	653 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SNPH	O15079	494 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	EMC8	O43402	210 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	HPN	P05981	417 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PRPS1L1	P21108	318 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	ACVR2A	P27037	513 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	HTR1E	P28566	365 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	GRN	P28799	593 aa	Known RBP	12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PTPN6	P29350	595 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	DCT	P40126	519 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	DIO3	P55073	304 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	MRPS22	P82650	360 aa	Known RBP	12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	PGS1	Q32NB8	556 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	EIPR1	Q53HC9	387 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	WIPI1	Q5MNZ9	446 aa	Predicted RBP	12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	OR5M10	Q6IEU7	315 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	YRDC	Q86U90	279 aa	Known RBP	12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	WDSUB1	Q8N9V3	476 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	ARL8A	Q96BM9	186 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	NTNG2	Q96CW9	530 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	CHMP6	Q96FZ7	201 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	YIPF4	Q9BSR8	244 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	UBQLN3	Q9H347	655 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	ATAD3A	Q9NVI7	634 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	COQ3	Q9NZJ6	369 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	FLRT3	Q9NZU0	649 aa		12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	MRTO4	Q9UKD2	239 aa	Known RBP	12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	NCOA6	Q14686	2063 aa	Predicted RBP	12.91	□□□□□ -0.34
CCHCR1-222	ENST00000507459	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	NBPF19	A0A087WUL8	3843 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	CFLAR	O15519	480 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SCO2	O43819	266 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	CBR3	O75828	277 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	KCNH1	O95259	989 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	CLDN14	O95500	239 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	C6orf47	O95873	294 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	IFI6	P09912	130 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	KIT	P10721	976 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	AGA	P20933	346 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	SLC18A1	P54219	525 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	NUP107	P57740	925 aa		12.9	□□□□□ -0.34
CCHCR1-222	ENST00000507459	ATG16L1	Q676U5	607 aa		12.9	□□□□□ -0.34

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