RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 NOXA1Q86UR1 476 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 LAS2Q8IYD9 372 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 SLC39A11Q8N1S5 342 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 CBARPQ8N350 705 aaPredicted RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 PIK3R3Q92569 461 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 MND1Q9BWT6 205 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 HCAR1Q9BXC0 346 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 SYNPO2LQ9H987 977 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 SEMA4GQ9NTN9 838 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 ASIC5Q9NY37 505 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 AP3M1Q9Y2T2 418 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 TRAV27A0A087WT01 109 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 E9PI62 339 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 STMND1H3BQB6 276 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 SLC30A4O14863 429 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 IGHA2P01877 340 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 SCG5P05408 212 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 MPC1LP0DKB6 136 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 IL1RNP18510 177 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 RPS27P42677 84 aaKnown RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 MTNR1AP48039 350 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 GPR50Q13585 617 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 GGTA1PQ4G0N0 100 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 C2orf27AQ580R0 203 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 ZNF805Q5CZA5 627 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 ANKK1Q8NFD2 765 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 OR56A3Q8NH54 315 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 SLC7A6Q92536 515 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 TMCO6Q96DC7 493 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 MSANTD3Q96H12 275 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 PPP1R16AQ96I34 528 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 RIPOR3Q96MK2 946 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 MAPKAP1Q9BPZ7 522 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 ZDHHC5Q9C0B5 715 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 BHLHE41Q9C0J9 482 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 SLC22A4Q9H015 551 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 PPIL3Q9H2H8 161 aaKnown RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 FN3KQ9H479 309 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 RNF121Q9H920 327 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 MBNL1Q9NR56 388 aaKnown RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 PLEKHB1Q9UF11 243 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 HCN2Q9UL51 889 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 HS3ST2Q9Y278 367 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 MRPS23Q9Y3D9 190 aaKnown RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 RPL36Q9Y3U8 105 aaKnown RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 A0A087WV48 116 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 ISPDA4D126 451 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 NOS1APO75052 506 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 LDB3O75112 727 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 ZNF806P0C7X5 589 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 SAGP10523 405 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 CEBPBP17676 345 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 POU3F3P20264 500 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 AK4P27144 223 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 RAB15P59190 212 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 BTN3A2P78410 334 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 RAB33AQ14088 237 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.13□□□□□ -1.114e-6■□□□□ 10.9
USP40-203ENST00000427112 PSRC1Q6PGN9 363 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 ZNF793Q6ZN11 406 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 AMZ2Q86W34 360 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 KRT73Q86Y46 540 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 KIAA1958Q8N8K9 716 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 UPRTQ96BW1 309 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 NUDT15Q9NV35 164 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 SPHK1Q9NYA1 384 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 NLGN3Q9NZ94 848 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 SIRT4Q9Y6E7 314 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 A0A1B0GVT2 93 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 ICMTO60725 284 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 TBX6O95947 436 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 PROS1P07225 676 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 UQCRC2P22695 453 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 NOS3P29474 1203 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 PPP2R1BP30154 601 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 PSMB10P40306 273 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 EFR3AQ14156 821 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 HTR3DQ70Z44 454 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 TMC8Q8IU68 726 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 CCDC28AQ8IWP9 274 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 BMPERQ8N8U9 685 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 GATSQ8NAP1 163 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 SLC16A11Q8NCK7 471 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 SENP5Q96HI0 755 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 BCL7BQ9BQE9 202 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 SAV1Q9H4B6 383 aaPredicted RBP8.13□□□□□ -1.11
USP40-203ENST00000427112 TMEM74BQ9NUR3 256 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 SERGEFQ9UGK8 458 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 CHST2Q9Y4C5 530 aa8.13□□□□□ -1.11
USP40-203ENST00000427112 HOXA2O43364 376 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 AKAP8O43823 692 aaKnown RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 DNAJB5O75953 348 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 PVRP15151 417 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 PPIBP23284 216 aaKnown RBP8.12□□□□□ -1.11
USP40-203ENST00000427112 UGT2B10P36537 528 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 MAP2K3P46734 347 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 CDK10Q15131 360 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 DEFB134Q4QY38 66 aa8.12□□□□□ -1.11
USP40-203ENST00000427112 LCN1P1Q5VSP4 162 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms