RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 OR6C1Q96RD1 312 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 SPATA5L1Q9BVQ7 753 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 RHCGQ9UBD6 479 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 FOXD2O60548 495 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 CCNB2O95067 398 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 EPPINO95925 133 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 HTR1AP08908 422 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 JUNBP17275 347 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 CBLP22681 906 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 PMS2P3Q13401 168 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 COLEC12Q5KU26 742 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 MFSD12Q6NUT3 480 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 TTLL10Q6ZVT0 673 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 OR2L13Q8N349 312 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 VANGL1Q8TAA9 524 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 HRASLS5Q96KN8 279 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 MS4A4EQ96PG1 132 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 ALPK1Q96QP1 1244 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 NIPSNAP1Q9BPW8 284 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 SIDT1Q9NXL6 827 aaKnown RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 ACAD8Q9UKU7 415 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 SPACA6W5XKT8 324 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 ZNF749O43361 778 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 CHST10O43529 356 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 PORP16435 677 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 AVPR1BP47901 424 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 SHC2P98077 582 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 MAD2L1BPQ15013 274 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 GPAT3Q53EU6 434 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 CCDC157Q569K6 752 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 ZNF628Q5EBL2 1059 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 STPG1Q5TH74 334 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 ZNF770Q6IQ21 691 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 METTL27Q8N6F8 245 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 COL26A1Q96A83 441 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 MMABQ96EY8 250 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 NDC1Q9BTX1 674 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 SLC38A1Q9H2H9 487 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 NMNAT1Q9HAN9 279 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 PAK1IP1Q9NWT1 392 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 GIN1Q9NXP7 522 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 RSL24D1Q9UHA3 163 aaKnown RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 CLCA2Q9UQC9 943 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 LIPT1Q9Y234 373 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 TMEM184BQ9Y519 407 aaPredicted RBP21.1■□□□□ 0.97
CDX1-201ENST00000231656 DSPPQ9NZW4 1301 aa21.1■□□□□ 0.97
CDX1-201ENST00000231656 HYAL3O43820 417 aaPredicted RBP21.09■□□□□ 0.97
CDX1-201ENST00000231656 NME6O75414 186 aaPredicted RBP21.09■□□□□ 0.97
CDX1-201ENST00000231656 ANGPTL1O95841 491 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 CSTF2P33240 577 aaKnown RBP eCLIP21.09■□□□□ 0.97
CDX1-201ENST00000231656 NUP107P57740 925 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 ID2Q02363 134 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 ILKQ13418 452 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 HEPHL1Q6MZM0 1159 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 SPARTQ8N0X7 666 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 SLC35A4Q96G79 324 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 TRNT1Q96Q11 434 aaKnown RBP21.09■□□□□ 0.97
CDX1-201ENST00000231656 OCIAD1Q9NX40 245 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 PTTG2Q9NZH5 202 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 HCN3Q9P1Z3 774 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 PTGFRNQ9P2B2 879 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 DHCR7Q9UBM7 475 aaKnown RBP21.09■□□□□ 0.97
CDX1-201ENST00000231656 PCDHGA6Q9Y5G7 932 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 KIF26BQ2KJY2 2108 aa21.09■□□□□ 0.97
CDX1-201ENST00000231656 FER1L5A0AVI2 2057 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 TRBV4-1A0A0J9YWV2 114 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 H0YIG0 161 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 FGF17O60258 216 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 LGI1O95970 557 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 ALAS2P22557 587 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 PEX19P40855 299 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 RAB38P57729 211 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 CXCR4P61073 352 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 RAB39AQ14964 217 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 NEDD8Q15843 81 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 FHL5Q5TD97 284 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 XAF1Q6GPH4 301 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 CDC73Q6P1J9 531 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 B3GNT6Q6ZMB0 384 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 DEF8Q6ZN54 512 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 PIP4P1Q86T03 277 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 BPIFB6Q8NFQ5 453 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 MVB12AQ96EY5 273 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 AASSQ9UDR5 926 aa21.08■□□□□ 0.97
CDX1-201ENST00000231656 FAM227AF5H4B4 570 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 M0R3H8 397 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 AHCYL1O43865 530 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 LDB3O75112 727 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 RFPL3O75679 317 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 GPR75O95800 540 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 FMO3P31513 532 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 GGT2P36268 569 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 MAT1AQ00266 395 aaKnown RBP21.08■□□□□ 0.96
CDX1-201ENST00000231656 Q6ZPB1 254 aaPredicted RBP21.08■□□□□ 0.96
CDX1-201ENST00000231656 HMGN2P46Q86SG4 172 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 TAGAPQ8N103 731 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 AQP11Q8NBQ7 271 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 AGBL5Q8NDL9 886 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 SIMC1Q8NDZ2 872 aa21.08■□□□□ 0.96
CDX1-201ENST00000231656 TANKQ92844 425 aa21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms