RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 GIMAP5Q96F15 307 aa17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 ZNF582Q96NG8 517 aaPredicted RBP17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 TRNT1Q96Q11 434 aaKnown RBP17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 CDCA3Q99618 268 aaPredicted RBP17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 MND1Q9BWT6 205 aa17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 POLDIP3Q9BY77 421 aaKnown RBP17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 KLF15Q9UIH9 416 aa17.21■□□□□ 0.34
SHKBP1-201ENST00000291842 GSAPA4D1B5 854 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 FAM170BA6NMN3 283 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 ALOX12P18054 663 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 POLR2CP19387 275 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 CPN2P22792 545 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 SOX6P35712 828 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 ETV5P41161 510 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 ETV1P50549 477 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 RNF144AP50876 292 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 CDK5Q00535 292 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 OCLNQ16625 522 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 KIAA1324Q6UXG2 1013 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 ZNF730Q6ZMV8 503 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 FAM26EQ8N5C1 309 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 NANOGP1Q8N7R0 232 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 OR52I1Q8NGK6 324 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 OR8D4Q8NGM9 314 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 CDS1Q92903 461 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 GAL3ST3Q96A11 431 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 MOAP1Q96BY2 351 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 BMFQ96LC9 184 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 C10orf90Q96M02 699 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 ASPNQ9BXN1 380 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 NUAK2Q9H093 628 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 PRUNE2Q8WUY3 3088 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 TAF4O00268 1085 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 MYL12BO14950 172 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 ZSCAN9O15535 394 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 KDM1AO60341 852 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 RPS19P39019 145 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 TGM4P49221 684 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 ATAD3BQ5T9A4 648 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 CD300LDQ6UXZ3 194 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 SHFQ7M4L6 423 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 NKAIN4Q8IVV8 208 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 POC5Q8NA72 575 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 ADAMTS15Q8TE58 950 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 PATE1Q8WXA2 126 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 TMEM203Q969S6 136 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 ACTRT3Q9BYD9 372 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 IL20RAQ9UHF4 553 aa17.2■□□□□ 0.34
SHKBP1-201ENST00000291842 LRRTM2O43300 516 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 CH25HO95992 272 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 RPS15AP62244 130 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 RGS1Q08116 209 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 NFATC4Q14934 902 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 ENTPD8Q5MY95 495 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 SFTPA2Q8IWL1 248 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 FRMD1Q8N878 549 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 OR52P1PQ8NH57 321 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 SAP130Q9H0E3 1048 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 TPK1Q9H3S4 243 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 LYARQ9NX58 379 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 GIN1Q9NXP7 522 aa17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 ARHGEF17Q96PE2 2063 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-201ENST00000291842 LOC105369274A0A096LPK9 316 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 LOC102723532A0A0G2JNH3 316 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 EIF2S1P05198 315 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 CCNYL3P0C7X3 344 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 ACADMP11310 421 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 CTHP32929 405 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 CRYBB2P43320 205 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 TSFMP43897 325 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 SMSP52788 366 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 RUNX2Q13950 521 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 CEBPEQ15744 281 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 CARTPTQ16568 116 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 NDUFA9Q16795 377 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 CCNJQ5T5M9 372 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 USP30Q70CQ3 517 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 RRM2BQ7LG56 351 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 OR4N4Q8N0Y3 316 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 LRRC25Q8N386 305 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 WDR92Q96MX6 357 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 OR2A14Q96R47 310 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 CFL2Q9Y281 166 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 A3GALT2U3KPV4 340 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 TRIOO75962 3097 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 KNL1Q8NG31 2342 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 ALOX5P09917 674 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 SLC35G6P0C7Q6 338 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 MXD1Q05195 221 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 OR2G6Q5TZ20 316 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 MINDY2Q8NBR6 621 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 FLVCR1-AS1Q8TAF5 88 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 TEX47Q8TBZ9 253 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 MRGPRX1Q96LB2 322 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 ARHGDIGQ99819 225 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 LMAN2LQ9H0V9 348 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 SNTG1Q9NSN8 517 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 SACM1LQ9NTJ5 587 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 KCMF1Q9P0J7 381 aa17.18■□□□□ 0.34
SHKBP1-201ENST00000291842 ANKMY1Q9P2S6 941 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 167.3 ms