RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ANKRA2Q9H9E1 313 aa21.15■□□□□ 0.98
CDX1-201ENST00000231656 SEC14L3Q9UDX4 400 aa21.15■□□□□ 0.98
CDX1-201ENST00000231656 GMPPBQ9Y5P6 360 aa21.15■□□□□ 0.98
CDX1-201ENST00000231656 FFAR1O14842 300 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 FOXS1O43638 330 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 ETS2P15036 469 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 AGXTP21549 392 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 TLX1P31314 330 aaPredicted RBP21.14■□□□□ 0.97
CDX1-201ENST00000231656 GABARAPL2P60520 117 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 NPRL3Q12980 569 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 OLIG3Q7RTU3 272 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 OR5T3Q8NGG3 340 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 OR7D2Q96RA2 312 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 FANCEQ9HB96 536 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 RLIMQ9NVW2 624 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 SERTAD3Q9UJW9 196 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 KCNE3Q9Y6H6 103 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 PCNX2A6NKB5 2137 aa21.14■□□□□ 0.97
CDX1-201ENST00000231656 A0A0A6YYC8 382 aaPredicted RBP21.13■□□□□ 0.97
CDX1-201ENST00000231656 I3L1I5 382 aaPredicted RBP21.13■□□□□ 0.97
CDX1-201ENST00000231656 ASNA1O43681 348 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 ANXA8P13928 327 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 IL5RAQ01344 420 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 GNA13Q14344 377 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 GANABQ14697 944 aaKnown RBP21.13■□□□□ 0.97
CDX1-201ENST00000231656 PRAMEF8Q5VWM4 474 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 PRAMEF7Q5VXH5 474 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 B3GNT8Q7Z7M8 397 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 KRT73Q86Y46 540 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 GPR135Q8IZ08 494 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 OR7G2Q8NG99 324 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 OR4D11Q8NGI4 311 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 ZNF566Q969W8 418 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 COMMD3-BMI1R4GMX3 469 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 COL27A1Q8IZC6 1860 aaPredicted RBP21.13■□□□□ 0.97
CDX1-201ENST00000231656 RIF1Q5UIP0 2472 aaKnown RBP21.13■□□□□ 0.97
CDX1-201ENST00000231656 ZNF292O60281 2723 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 AGRPO00253 132 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 SLC1A7O00341 560 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 PCDH17O14917 1159 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 SEMA7AO75326 666 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 RDH16O75452 317 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 GADD45GO95257 159 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 NSA2O95478 260 aaKnown RBP21.13■□□□□ 0.97
CDX1-201ENST00000231656 ACY1Q03154 408 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 ZFP36L1Q07352 338 aaKnown RBP21.13■□□□□ 0.97
CDX1-201ENST00000231656 FAM214AQ32MH5 1076 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 ZBED5Q49AG3 693 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 TCTN3Q6NUS6 607 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 KCTD8Q6ZWB6 473 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 COMTD1Q86VU5 262 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 OR4N5Q8IXE1 308 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 SHISA5Q8N114 240 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 CNIH3Q8TBE1 160 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 NMD3Q96D46 503 aaKnown RBP21.13■□□□□ 0.97
CDX1-201ENST00000231656 CDC6Q99741 560 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 APOL4Q9BPW4 351 aa21.13■□□□□ 0.97
CDX1-201ENST00000231656 PAPOLBQ9NRJ5 636 aaKnown RBP21.13■□□□□ 0.97
CDX1-201ENST00000231656 ZFHX2Q9C0A1 2572 aaPredicted RBP21.12■□□□□ 0.97
CDX1-201ENST00000231656 A0A0G2JPF8 293 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 CCDC160A6NGH7 325 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 HNRNPCL2B2RXH8 293 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 HNRNPCL3B7ZW38 293 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 HNRNPCL4P0DMR1 293 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 EEF1B2P24534 225 aaKnown RBP21.12■□□□□ 0.97
CDX1-201ENST00000231656 GCGRP47871 477 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 PDX1P52945 283 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 ESRRGP62508 458 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 SKP1P63208 163 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 RPP38P78345 283 aaKnown RBP21.12■□□□□ 0.97
CDX1-201ENST00000231656 TRA2AQ13595 282 aaKnown RBP eCLIP21.12■□□□□ 0.97
CDX1-201ENST00000231656 BROXQ5VW32 411 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 NIPAL1Q6NVV3 410 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 FAM111BQ6SJ93 734 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 GPR141Q7Z602 305 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 TSPYL5Q86VY4 417 aaPredicted RBP21.12■□□□□ 0.97
CDX1-201ENST00000231656 CCDC71Q8IV32 467 aaPredicted RBP21.12■□□□□ 0.97
CDX1-201ENST00000231656 CA13Q8N1Q1 262 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 SGCDQ92629 289 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 DHRS1Q96LJ7 313 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 WFDC6Q9BQY6 131 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 BTBD2Q9BX70 525 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 ACTRT3Q9BYD9 372 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 POLR1BQ9H9Y6 1135 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 EQTNQ9NQ60 294 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 CUTCQ9NTM9 273 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 BLOC1S6Q9UL45 172 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 POFUT2Q9Y2G5 429 aa21.12■□□□□ 0.97
CDX1-201ENST00000231656 ARRDC5A6NEK1 342 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 CYR61O00622 381 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 ABCB7O75027 752 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 CCDC159P0C7I6 412 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 CPMP14384 443 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 SOX18P35713 384 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 PRAMEF17Q5VTA0 474 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 RBM45Q8IUH3 476 aaKnown RBP21.11■□□□□ 0.97
CDX1-201ENST00000231656 LACC1Q8IV20 430 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 TMEM52Q8NDY8 209 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 OR9Q2Q8NGE9 314 aa21.11■□□□□ 0.97
CDX1-201ENST00000231656 PHF10Q8WUB8 498 aaKnown RBP21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms