RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 HTR6P50406 440 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 HMGCS1Q01581 520 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 DUSP2Q05923 314 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 CRYZQ08257 329 aaKnown RBP17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 ZNF628Q5EBL2 1059 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 CFAP157Q5JU67 520 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 BICRALQ6AI39 1079 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 VASNQ6EMK4 673 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 TMCO6Q96DC7 493 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 METTL2AQ96IZ6 378 aaKnown RBP17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 BTBD9Q96Q07 612 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 TIMP4Q99727 224 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 GPR55Q9Y2T6 319 aaPredicted RBP17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 ANKHD1Q8IWZ3 2542 aaKnown RBP17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 OR6C70A6NIJ9 312 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 PLOD3O60568 738 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 SLITRK5O94991 958 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 TIMP3P35625 211 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 ADH7P40394 386 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 PEX19P40855 299 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 MRPS35P82673 323 aaKnown RBP17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 ZNF763Q0D2J5 394 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 LTB4RQ15722 352 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 IMPG1Q17R60 797 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 SPDYAQ5MJ70 313 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 FRMD7Q6ZUT3 714 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 TRIM46Q7Z4K8 759 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 LACC1Q8IV20 430 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 UBLCP1Q8WVY7 318 aaPredicted RBP17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 COL21A1Q96P44 957 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 OSBPL11Q9BXB4 747 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 PRDM14Q9GZV8 571 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 MID2Q9UJV3 735 aa17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 EXO1Q9UQ84 846 aaKnown RBP17.43■□□□□ 0.38
CCDC28A-203ENST00000617445 UBFD1O14562 309 aaKnown RBP17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 SNPHO15079 494 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 PLIN3O60664 434 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 ICOSLGO75144 302 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 CRCPO75575 148 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 CBR3O75828 277 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 ACTL6AO96019 429 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 DDCP20711 480 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 PTPN6P29350 595 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 NAGLUP54802 743 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 MRPS22P82650 360 aaKnown RBP17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 BTKQ06187 659 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 EFR3AQ14156 821 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 TOMM20Q15388 145 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 NNATQ16517 81 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 CES4AQ5XG92 561 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 FAM180BQ6P0A1 224 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 ANGPTL8Q6UXH0 198 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 FAM9CQ8IZT9 166 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 EXOSC8Q96B26 276 aaKnown RBP17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 LRRC46Q96FV0 321 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 BBS4Q96RK4 519 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 KCNA7Q96RP8 456 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 RRAGDQ9NQL2 400 aaPredicted RBP17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 OXSMQ9NWU1 459 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 TAS2R9Q9NYW1 312 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 TAS2R7Q9NYW3 318 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 KLRF1Q9NZS2 232 aa17.42■□□□□ 0.38
CCDC28A-203ENST00000617445 PRAMEF25A6NGN4 478 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 COPEO14579 308 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 GNB5O14775 395 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 UGT2B11O75310 529 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 REM1O75628 298 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 UROSP10746 265 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 CPA3P15088 417 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 CEACAM8P31997 349 aaPredicted RBP17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 KRT20P35900 424 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 C2orf80Q0P641 193 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 ACSF3Q4G176 576 aaPredicted RBP17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 GSPT2Q8IYD1 628 aaKnown RBP17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 SIMC1Q8NDZ2 872 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 OR9A2Q8NGT5 310 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 ABTB1Q969K4 478 aaPredicted RBP17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 SLC35A4Q96G79 324 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 VSTM2LQ96N03 204 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 NODALQ96S42 347 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 ZNF559Q9BR84 538 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 L2HGDHQ9H9P8 463 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 SENP1Q9P0U3 644 aa17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 ZNF629Q9UEG4 869 aaPredicted RBP17.41■□□□□ 0.38
CCDC28A-203ENST00000617445 A0A087WV62 115 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 MYO1GB0I1T2 1018 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 DVL2O14641 736 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 ERN1O75460 977 aaKnown RBP17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 RSL1D1O76021 490 aaKnown RBP17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 IL2RAP01589 272 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 SHBGP04278 402 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 CT45A8P0DMV1 189 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 CT45A9P0DMV2 189 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 BMP7P18075 431 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 PTGDSP41222 190 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 SLCO1A2P46721 670 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 FOXA1P55317 472 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 CT45A2Q5DJT8 189 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 FAM219BQ5XKK7 198 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 NSUN5P2Q63ZY6 315 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms