RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 NANOGP8Q6NSW7 305 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 NOXRED1Q6NXP6 359 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 SLC39A4Q6P5W5 647 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 LYPD8Q6UX82 237 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 ZNF704Q6ZNC4 412 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-211ENST00000543710 TMEM200AQ86VY9 491 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 NDRG1Q92597 394 aaKnown RBP7.44□□□□□ -1.22
VPS13D-211ENST00000543710 SGTBQ96EQ0 304 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 AMDHD1Q96NU7 426 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 TWNKQ96RR1 684 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 NANOGQ9H9S0 305 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 ABCB9Q9NP78 766 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 DYNLRB1Q9NP97 96 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 IGSF5Q9NSI5 407 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 PIGVQ9NUD9 493 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 NHSL1Q5SYE7 1610 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 DCDC2BA2VCK2 349 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 HSPB2A8KAH6 182 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 LOC730098B7Z3J9 87 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 H7C2Y5 167 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 FOXE1O00358 373 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-211ENST00000543710 CREBL2O60519 120 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-211ENST00000543710 F11P03951 625 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 G6PDP11413 515 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 POU3F3P20264 500 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-211ENST00000543710 BTN3A2P78410 334 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 VLDLRP98155 873 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 IRF4Q15306 451 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 HSPB2Q16082 182 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 ULK3Q6PHR2 472 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 TRIM74Q86UV6 250 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 TRIM73Q86UV7 250 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 PPP1R3BQ86XI6 285 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 FBXO15Q8NCQ5 510 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-211ENST00000543710 RNF128Q8TEB7 428 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 HOXB13Q92826 284 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-211ENST00000543710 ACTRT3Q9BYD9 372 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 MTHFD2LQ9H903 347 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-211ENST00000543710 ACP6Q9NPH0 428 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 ZCCHC3Q9NUD5 404 aaKnown RBP7.44□□□□□ -1.22
VPS13D-211ENST00000543710 ABRACLQ9P1F3 81 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 MYH2Q9UKX2 1941 aa7.44□□□□□ -1.22
VPS13D-211ENST00000543710 HMX3A6NHT5 357 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 CLCA1A8K7I4 914 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 CXorf49A8MYA2 514 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-211ENST00000543710 S1PR4O95977 384 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 KLK1P06870 262 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 UGT2B7P16662 529 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 NPR2P20594 1047 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 PXNP49023 591 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-211ENST00000543710 RIDAP52758 137 aaKnown RBP7.43□□□□□ -1.22
VPS13D-211ENST00000543710 MALLQ13021 153 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 CST6Q15828 149 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 HAGHLQ6PII5 290 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-211ENST00000543710 ZER1Q7Z7L7 766 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 TCEAL8Q8IYN2 117 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 ZNF619Q8N2I2 560 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 GAB3Q8WWW8 586 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 SYT3Q9BQG1 590 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 FUZQ9BT04 418 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 CFHR5Q9BXR6 569 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 PRDM6Q9NQX0 595 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 SLC35A3Q9Y2D2 325 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 U3KQV3 271 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 ARPC4-TTLL3A0A0A6YYG9 625 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 TUBAL3A6NHL2 446 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 M0QZQ0 153 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 WNT7AO00755 349 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 BRINP1O60477 761 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 PRAMEF2O60811 474 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 EDNRBP24530 442 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 MECP2P51608 486 aaKnown RBP7.43□□□□□ -1.22
VPS13D-211ENST00000543710 DCAF7P61962 342 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 C9orf50Q5SZB4 431 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 PM20D1Q6GTS8 502 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 RNF113BQ8IZP6 322 aaKnown RBP7.43□□□□□ -1.22
VPS13D-211ENST00000543710 CHDHQ8NE62 594 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-211ENST00000543710 OR5M3Q8NGP4 307 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 OR14K1Q8NGZ2 314 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 ASB15Q8WXK1 588 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 SMPDL3BQ92485 455 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 MRGPRX2Q96LB1 330 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 MS4A4EQ96PG1 132 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 IL4I1Q96RQ9 567 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 NPLQ9BXD5 320 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-211ENST00000543710 SLC12A9Q9BXP2 914 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 RNF32Q9H0A6 362 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 TNKS2Q9H2K2 1166 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 XKR8Q9H6D3 395 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 RPH3AQ9Y2J0 694 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-211ENST00000543710 PRELID3BQ9Y3B1 194 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 PCDHB14Q9Y5E9 798 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 A8MX80 341 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 H3BSA7 217 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 PCDH17O14917 1159 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 C6orf47O95873 294 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 CKMT2P17540 419 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 LHCGRP22888 699 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 TNFSF4P23510 183 aa7.43□□□□□ -1.22
VPS13D-211ENST00000543710 CRABP1P29762 137 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms