RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KRT34O76011 436 aa27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 DCAF7P61962 342 aa27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 ZNHIT3Q15649 155 aaPredicted RBP27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 C16orf58Q96GQ5 468 aa27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 LCORQ96JN0 433 aaPredicted RBP27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 SLC35G5Q96KT7 338 aa27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 EPS8L2Q9H6S3 715 aa27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 STMN3Q9NZ72 180 aa27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 SLAMF8Q9P0V8 285 aa27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 GPR55Q9Y2T6 319 aaPredicted RBP27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 YARS2Q9Y2Z4 477 aaKnown RBP27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 FRG2CA6NGY1 282 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 BBIP1A8MTZ0 92 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 ERVH48-1M5A8F1 160 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 PDGFAP04085 211 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 ZCCHC18P0CG32 403 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 CT45A8P0DMV1 189 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 CT45A9P0DMV2 189 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 PPICP45877 212 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 SSR4P51571 173 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 RPS26P62854 115 aaKnown RBP27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 CYLC2Q14093 348 aaPredicted RBP27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 CT45A2Q5DJT8 189 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 SAXO2Q658L1 398 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 ANGPTL8Q6UXH0 198 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 C6orf120Q7Z4R8 191 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 CDRT4Q8N9R6 151 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 SLC22A8Q8TCC7 542 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 TP53INP1Q96A56 240 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 NEURL3Q96EH8 262 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 OTUB1Q96FW1 271 aaPredicted RBP27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 YIPF4Q9BSR8 244 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 LMF2Q9BU23 707 aaKnown RBP27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 ADNPQ9H2P0 1102 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 TUBD1Q9UJT1 453 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 TP53TG5Q9Y2B4 290 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 PCDHB14Q9Y5E9 798 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 ZFYVE26Q68DK2 2539 aa27.38■■□□□ 1.97
LIMCH1-211ENST00000509638 CAPN14A8MX76 684 aa27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 ZNF354AO60765 605 aaPredicted RBP27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 KCNH1O95259 989 aa27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 NADKO95544 446 aaPredicted RBP27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 F10P00742 488 aa27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 C1QCP02747 245 aa27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 HOXB9P17482 250 aaPredicted RBP27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 PRIM2P49643 509 aa27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 PSG6Q00889 435 aa27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 LRIF1Q5T3J3 769 aa27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 REP15Q6BDI9 236 aa27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 DPP10Q8N608 796 aa27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 C9orf43Q8TAL5 461 aaPredicted RBP27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 SLC9A6Q92581 669 aa27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 AURKBQ96GD4 344 aaPredicted RBP27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 FAF1Q9UNN5 650 aaPredicted RBP27.37■■□□□ 1.97
LIMCH1-211ENST00000509638 K7EM74 188 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 ACP2P11117 423 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 COX4I1P13073 169 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 DRD5P21918 477 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 MMEL1Q495T6 779 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 PIGGQ5H8A4 983 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 DHDDSQ86SQ9 333 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 SLC44A2Q8IWA5 706 aaPredicted RBP27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 TAGAPQ8N103 731 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 RP9Q8TA86 221 aaKnown RBP27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 PNPT1Q8TCS8 783 aaKnown RBP27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 HOXB13Q92826 284 aaPredicted RBP27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 PHF12Q96QT6 1004 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 LMF1Q96S06 567 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 ACTRT3Q9BYD9 372 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 SERHL2Q9H4I8 314 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 ANKRD10Q9NXR5 420 aa27.36■■□□□ 1.97
LIMCH1-211ENST00000509638 ACOX3O15254 700 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 WDPCPO95876 746 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 SOX3P41225 446 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 NRG3P56975 720 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 COQ5Q5HYK3 327 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 ZNF468Q5VIY5 522 aaPredicted RBP27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 ZCCHC12Q6PEW1 402 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 IGFL2Q6UWQ7 119 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 PRR22Q8IZ63 422 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 TMEM156Q8N614 296 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 SLC16A11Q8NCK7 471 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 ZFP90Q8TF47 636 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 ASB15Q8WXK1 588 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 SLC25A37Q9NYZ2 338 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 PLA2G3Q9NZ20 509 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 ZNF451Q9Y4E5 1061 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 MRASO14807 208 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 MAP3K8P41279 467 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 CASP9P55211 416 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 NFYCQ13952 458 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 CDC73Q6P1J9 531 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 MSRB3Q8IXL7 192 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 TM9SF4Q92544 642 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 HSPBAP1Q96EW2 488 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 RNF32Q9H0A6 362 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 IL1RL2Q9HB29 575 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 VAPAQ9P0L0 249 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 OR10H1Q9Y4A9 318 aa27.35■■□□□ 1.97
LIMCH1-211ENST00000509638 PCDHGB7Q9Y5F8 929 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms