RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PLET1Q6UQ28 207 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 BAIAP2L2Q6UXY1 529 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ANKRD33Q7Z3H0 272 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 TRAPPC5Q8IUR0 188 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 OR4K1Q8NGD4 311 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 TFGQ92734 400 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 RELTQ969Z4 430 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ATF6BQ99941 703 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FAM126AQ9BYI3 521 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FBXO44Q9H4M3 255 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 B3GAT2Q9NPZ5 323 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 RASSF1Q9NS23 344 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 GPR83Q9NYM4 423 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 TRPM5Q9NZQ8 1165 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FLRT1Q9NZU1 646 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 CD84Q9UIB8 345 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 CLEC4AQ9UMR7 237 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 NAP1L6A6NFF2 107 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MAGEB17A8MXT2 336 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 BLOC1S5-TXNDC5H3BN57 136 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 CCL16O15467 120 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SULT1B1O43704 296 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MFN2O95140 757 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 HLA-DPB1P04440 258 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF8P17098 575 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 DGKAP23743 735 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SEC13P55735 322 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MAXP61244 160 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FHL1Q13642 323 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FAM110CQ1W6H9 321 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ARSIQ5FYB1 569 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 XKR6Q5GH73 641 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 PRPF38BQ5VTL8 546 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 PLPP4Q5VZY2 271 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 BICRALQ6AI39 1079 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 DMKNQ6E0U4 476 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ABI3BPQ7Z7G0 1075 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 LAX1Q8IWV1 398 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MAFAQ8NHW3 353 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 Q96MT0 163 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 DPH2Q9BQC3 489 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 EFCAB11Q9BUY7 163 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SAP130Q9H0E3 1048 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FBLN5Q9UBX5 448 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 C8GP07360 202 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 CLUP10909 449 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 GABRA1P14867 456 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 GSTM3P21266 225 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 PRKACBP22694 351 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 FPR3P25089 353 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ANXA11P50995 505 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 RORCP51449 518 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 RBPJQ06330 500 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 STX4Q12846 297 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 MORN1Q5T089 497 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SHEQ5VZ18 495 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 VTCN1Q7Z7D3 282 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 LRRC28Q86X40 367 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 ELMO1Q92556 727 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 SCRN2Q96FV2 425 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 RBM18Q96H35 190 aaKnown RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 OR52E6Q96RD3 313 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 WASH6PQ9NQA3 447 aa5.05□□□□□ -1.6
SYNE1-220ENST00000471834 EVLQ9UI08 416 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-220ENST00000471834 TRAV1-2A0A0B4J238 106 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 C9JVG2 144 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 INMT-MINDY4F8WBC2 141 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 SCAMP2O15127 329 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 RAMP2O60895 175 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 NIPSNAP2O75323 286 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 CSO75390 466 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 CLDN9O95484 217 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 CD8AP01732 235 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 UCHL1P09936 223 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 NUDT7P0C024 238 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 SMIM10L2AP0DMW4 78 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 SMIM10L2BP0DMW5 78 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 MYL12AP19105 171 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ITGALP20701 1170 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 TEAD1P28347 426 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 CASRP41180 1078 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ETV1P50549 477 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 MMP15P51511 669 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PCBP4P57723 403 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PFN3P60673 137 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 BCL2L1Q07817 233 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 GNA13Q14344 377 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 GRHL2Q6ISB3 625 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 PM20D2Q8IYS1 436 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF557Q8N988 423 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 RNASE11Q8TAA1 199 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 OIT3Q8WWZ8 545 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 FOXJ1Q92949 421 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 HLA-CQ95604 372 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 HMCESQ96FZ2 354 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 TMEM175Q9BSA9 504 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ELAC1Q9H777 363 aaKnown RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 RANGRFQ9HD47 186 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ABCB9Q9NP78 766 aa5.04□□□□□ -1.6
SYNE1-220ENST00000471834 ADPRHL2Q9NX46 363 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms