RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PCDH7O60245 1069 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 HPNP05981 417 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 MYL2P10916 166 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 CCT5P48643 541 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 CCDC153Q494R4 210 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 TCHHL1Q5QJ38 904 aaPredicted RBP17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 RIPPLY2Q5TAB7 128 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 SLC30A6Q6NXT4 461 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 PM20D2Q8IYS1 436 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 CLYBLQ8N0X4 340 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 MMP21Q8N119 569 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 C11orf24Q96F05 449 aaPredicted RBP17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 UCK2Q9BZX2 261 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 UBQLN3Q9H347 655 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 ALKBH4Q9NXW9 302 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 EHD3Q9NZN3 535 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 TNFRSF10DQ9UBN6 386 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 HEY2Q9UBP5 337 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 GRID1Q9ULK0 1009 aa17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 WBP11Q9Y2W2 641 aaKnown RBP17.47■□□□□ 0.39
CCDC28A-203ENST00000617445 ANKRD17O75179 2603 aaKnown RBP17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 NKX2-6A6NCS4 301 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 TO15178 435 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 TRAPPC6AO75865 159 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 LRATO95237 230 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 CBX7O95931 251 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 IL3P08700 152 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 CHN1P15882 459 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 TIA1P31483 386 aaKnown RBP eCLIP17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 CDK9P50750 372 aaKnown RBP17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 DUSP8Q13202 625 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 EXOSC7Q15024 291 aaKnown RBP17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 SLC25A35Q3KQZ1 300 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 TRMT12Q53H54 448 aaKnown RBP17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 TIGD3Q6B0B8 471 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 ZYG11AQ6WRX3 759 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 TDRPQ86YL5 185 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 ULK2Q8IYT8 1036 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 CCNYL1Q8N7R7 359 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 ADCY4Q8NFM4 1077 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 OR52R1Q8NGF1 315 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 DTNBP1Q96EV8 351 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 ITPAQ9BY32 194 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 SLC6A15Q9H2J7 730 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 GSTO2Q9H4Y5 243 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 METTL7AQ9H8H3 244 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 MID1IP1Q9NPA3 183 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 PFDN4Q9NQP4 134 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 NPDC1Q9NQX5 325 aaPredicted RBP17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 DTX4Q9Y2E6 619 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 C15orf41Q9Y2V0 281 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 PLLPQ9Y342 182 aa17.46■□□□□ 0.39
CCDC28A-203ENST00000617445 SPG11Q96JI7 2443 aa17.46■□□□□ 0.38
CCDC28A-203ENST00000617445 C15orf38-AP3S2A0A0A6YYH1 394 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 A0A0G2JNJ9 132 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 FRG2CA6NGY1 282 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 HSPB2A8KAH6 182 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 ABCB7O75027 752 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 MPIP34949 423 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 CRHR1P34998 444 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 SOX18P35713 384 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 EMDP50402 254 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 DNAJB13P59910 316 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 RAE1P78406 368 aaKnown RBP17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 TLE4Q04727 773 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 PLCXD2Q0VAA5 305 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 CEBPEQ15744 281 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 HSPB2Q16082 182 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 ERCC6LQ2NKX8 1250 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 NHSL2Q5HYW2 709 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 FNDC7Q5VTL7 733 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 SH2D5Q6ZV89 423 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 HOMEZQ8IX15 550 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 DMRTC2Q8IXT2 367 aaPredicted RBP17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 CCDC116Q8IYX3 515 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 PRR22Q8IZ63 422 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 OR1J4Q8NGS1 313 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 FAM76AQ8TAV0 307 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 RDH11Q8TC12 318 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 C16orf78Q8WTQ4 265 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 HGDQ93099 445 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 OMA1Q96E52 524 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 APIPQ96GX9 242 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 GNRHR2Q96P88 292 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 STMN4Q9H169 189 aaPredicted RBP17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 SLC35C2Q9NQQ7 365 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 Q9UFV3 132 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 KCNN3Q9UGI6 736 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 EMCNQ9ULC0 261 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 TIMM22Q9Y584 194 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 OTOGQ6ZRI0 2925 aa17.45■□□□□ 0.38
CCDC28A-203ENST00000617445 A0A1W2PPM1 405 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 G3V2L1 256 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 EPPINO95925 133 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 PROCP04070 461 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 ANXA4P09525 319 aaPredicted RBP17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 PCSK2P16519 638 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 GCKP35557 465 aa17.44■□□□□ 0.38
CCDC28A-203ENST00000617445 TRPC1P48995 793 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms