RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MFSD9Q8NBP5 474 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 NUP43Q8NFH3 380 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 DOK4Q8TEW6 326 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 KLHL6Q8WZ60 621 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 OPALINQ96PE5 141 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 OR2M4Q96R27 311 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 TSSK6Q9BXA6 273 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 SCN2AQ99250 2005 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 AGAP5A6NIR3 686 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 CCRL2O00421 344 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 TBX1O43435 398 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 ZNF888P0CJ79 500 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 HOXB2P14652 356 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 MAN2A2P49641 1150 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 LIMK1P53667 647 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 SLC13A2Q13183 592 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 GINS1Q14691 196 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 INAVAQ3KP66 663 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 ZNF425Q6IV72 752 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 ACSM5Q6NUN0 579 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 BHLHB9Q6PI77 547 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 TMEM64Q6YI46 380 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 SIMC1Q8NDZ2 872 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 C1QTNF7Q9BXJ2 289 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 EGLN3Q9H6Z9 239 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 EXOSC4Q9NPD3 245 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 COLEC10Q9Y6Z7 277 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 A0A1W2PQF6 199 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 WWP2O00308 870 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 GUCY1B2O75343 617 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 CSO75390 466 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 GPX5O75715 221 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 APOL3O95236 402 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 KLF8O95600 359 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 MPIP34949 423 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 MLLT1Q03111 559 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 ZNF311Q5JNZ3 666 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 C6orf132Q5T0Z8 1188 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 PLEKHG7Q6ZR37 379 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 FAM92BQ6ZTR7 304 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 VN1R4Q7Z5H5 301 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 OR4N5Q8IXE1 308 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 SHISA5Q8N114 240 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 MORN4Q8NDC4 146 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 OR8J1Q8NGP2 316 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 ZCCHC10Q8TBK6 192 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 ELP4Q96EB1 424 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 KCNS3Q9BQ31 491 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 SPATA5L1Q9BVQ7 753 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 PLA2G12AQ9BZM1 189 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 MIR1-1HGQ9H1L0 117 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 BCL2L10Q9HD36 194 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 ZNF624Q9P2J8 865 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 NDOR1Q9UHB4 597 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 KLK4Q9Y5K2 254 aa17.25■□□□□ 0.35
SHKBP1-201ENST00000291842 CPSF4LA6NMK7 179 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 DNAJB6O75190 326 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 MAGP20916 626 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 GTF2E2P29084 291 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 TNFRSF4P43489 277 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 PRR5P85299 388 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 HYAL1Q12794 435 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 MAP4K2Q12851 820 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 ATAT1Q5SQI0 421 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 PPP2R2DQ66LE6 453 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 SDE2Q6IQ49 451 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 FAM83FQ8NEG4 500 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 OR56A1Q8NGH5 318 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 TMEM80Q96HE8 168 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 PRRC1Q96M27 445 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 CNPPD1Q9BV87 410 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 NTNG1Q9Y2I2 539 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 ZNF780BQ9Y6R6 833 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 A0A0G2JPF8 293 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 HNRNPCL2B2RXH8 293 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 HNRNPCL3B7ZW38 293 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 EMC8O43402 210 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 FCMRO60667 390 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 EGFP01133 1207 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 HNRNPCL4P0DMR1 293 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 PIPP12273 146 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 PTNP21246 168 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 CSTF2P33240 577 aaKnown RBP eCLIP17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 AVPR1BP47901 424 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 TAS2R41P59536 307 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 TFF2Q03403 129 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 MTSS1LQ765P7 747 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 SFXN5Q8TD22 340 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 ZNF681Q96N22 645 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 SLC38A1Q9H2H9 487 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 KIR3DX1Q9H7L2 352 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 HHATLQ9HCP6 504 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 SNX7Q9UNH6 387 aa17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 CAB39Q9Y376 341 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-201ENST00000291842 ACTR1BP42025 376 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 GIPRP48546 466 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 CD97P48960 835 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 ACTR1AP61163 376 aa17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 STXBP1P61764 594 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-201ENST00000291842 TMEM201Q5SNT2 666 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms