RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 PLXNA3P51805 1871 aa2.52□□□□□ -2.01
SCFD1-219ENST00000556413 ERICH2A1L162 156 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 CCDC69A6NI79 296 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 I3L4J1 428 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 K7EQG2 157 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 RNF103O00237 685 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 UBE2CO00762 179 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 HDAC3O15379 428 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 CCL16O15467 120 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 SNX3O60493 162 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 MTRF1O75570 445 aaKnown RBP2.51□□□□□ -2.01
SCFD1-219ENST00000556413 TDP2O95551 362 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 CXCL14O95715 111 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 MT-ND1P03886 318 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 SERPING1P05155 500 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 RPLP0P05388 317 aaKnown RBP2.51□□□□□ -2.01
SCFD1-219ENST00000556413 STAG3L1P0CL83 205 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 ADORA3P0DMS8 318 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 CHMLP26374 656 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 GPR183P32249 361 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 DUTP33316 252 aaKnown RBP2.51□□□□□ -2.01
SCFD1-219ENST00000556413 RAD52P43351 418 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 CAPZA2P47755 286 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 RIDAP52758 137 aaKnown RBP2.51□□□□□ -2.01
SCFD1-219ENST00000556413 NLRP11P59045 1033 aaKnown RBP2.51□□□□□ -2.01
SCFD1-219ENST00000556413 PRKCEQ02156 737 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 NUCB1Q02818 461 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 SMC1AQ14683 1233 aaKnown RBP2.51□□□□□ -2.01
SCFD1-219ENST00000556413 TOMM20Q15388 145 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 DUSP5Q16690 384 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 LACTB2Q53H82 288 aaPredicted RBP2.51□□□□□ -2.01
SCFD1-219ENST00000556413 ARMC4Q5T2S8 1044 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 LINC00242Q5T6M2 205 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 CASC1Q6TDU7 716 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 PRSS55Q6UWB4 352 aaPredicted RBP2.51□□□□□ -2.01
SCFD1-219ENST00000556413 VASH2Q86V25 355 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 CARM1Q86X55 608 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 PLA2G4DQ86XP0 818 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 ECHDC2Q86YB7 292 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 PRR22Q8IZ63 422 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 LRRC43Q8N309 656 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 CCDC185Q8N715 623 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 NCOA7Q8NI08 942 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 SPSB1Q96BD6 273 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 NUS1Q96E22 293 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 CPB2Q96IY4 423 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 ZNF285Q96NJ3 590 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 BTBD9Q96Q07 612 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 NDNQ99608 321 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 FAM129AQ9BZQ8 928 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 TMEM117Q9H0C3 514 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 ZBP1Q9H171 429 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 POLD4Q9HCU8 107 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 ZNF302Q9NR11 478 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 GSN-AS1Q9NRJ2 163 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 RGS18Q9NS28 235 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 MARCH5Q9NX47 278 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 TBC1D7Q9P0N9 293 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 VPS54Q9P1Q0 977 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 PIN4Q9Y237 131 aaKnown RBP2.51□□□□□ -2.01
SCFD1-219ENST00000556413 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.51□□□□□ -2.01
SCFD1-219ENST00000556413 NLRC5Q86WI3 1866 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 PLXNA4Q9HCM2 1894 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 LAMA4Q16363 1823 aa2.51□□□□□ -2.01
SCFD1-219ENST00000556413 TDRD6O60522 2096 aaKnown RBP2.5□□□□□ -2.01
SCFD1-219ENST00000556413 ZFHX2Q9C0A1 2572 aaPredicted RBP2.5□□□□□ -2.01
SCFD1-219ENST00000556413 A0A087WZ39 114 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 TRAV24A0A0B4J272 114 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 KLF18A0A0U1RQI7 1052 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 A0A1B0GTH9 108 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 SMCO2A6NFE2 343 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 RTCAO00442 366 aaKnown RBP2.5□□□□□ -2.01
SCFD1-219ENST00000556413 P4HA2O15460 535 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 ADAM12O43184 909 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 B4GALT5O43286 388 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 ZNF749O43361 778 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 SAP30O75446 220 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 SP9P0CG40 484 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 F3P13726 295 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 TCF4P15884 667 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 CETN2P41208 172 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 NBL1P41271 181 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 OR1G1P47890 313 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 GPC3P51654 580 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 CSTF1Q05048 431 aaKnown RBP2.5□□□□□ -2.01
SCFD1-219ENST00000556413 TRDNQ13061 729 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 FAM106AQ4KMX7 169 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 CEP55Q53EZ4 464 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 GLRA4Q5JXX5 417 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 KRT39Q6A163 491 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 TWF2Q6IBS0 349 aaKnown RBP2.5□□□□□ -2.01
SCFD1-219ENST00000556413 STKLD1Q8NE28 680 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 ITFG1Q8TB96 612 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 CASP10Q92851 521 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 P2RX5Q93086 422 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 ZNF707Q96C28 371 aaPredicted RBP2.5□□□□□ -2.01
SCFD1-219ENST00000556413 SPZ1Q9BXG8 430 aa2.5□□□□□ -2.01
SCFD1-219ENST00000556413 LSG1Q9H089 658 aaKnown RBP2.5□□□□□ -2.01
SCFD1-219ENST00000556413 CHMP4BQ9H444 224 aaKnown RBP2.5□□□□□ -2.01
SCFD1-219ENST00000556413 FZD8Q9H461 694 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms