RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 KCTD11Q693B1 232 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 CENPPQ6IPU0 288 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 SFR1Q86XK3 245 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 KDM8Q8N371 416 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 PGBD5Q8N414 524 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 CCDC110Q8TBZ0 833 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 IRGQQ8WZA9 623 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 PYCR2Q96C36 320 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 C19orf60Q96EN9 201 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 BICD1Q96G01 975 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 FAM71F1Q96KD3 344 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 PANX3Q96QZ0 392 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 CSF3RQ99062 836 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 GABRG3Q99928 467 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 FOXC2Q99958 501 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 JPH2Q9BR39 696 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 TRIM9Q9C026 710 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZMYND12Q9H0C1 365 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 SDCBP2Q9H190 292 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 HSD3B7Q9H2F3 369 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 Q9H8V8 135 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 PSTPIP2Q9H939 334 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 TCF7L2Q9NQB0 619 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 SPHK2Q9NRA0 654 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 TRMT6Q9UJA5 497 aaKnown RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 RUVBL2Q9Y230 463 aaKnown RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 STRAPQ9Y3F4 350 aaKnown RBP4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 CACNA1CQ13936 2221 aa4.29□□□□□ -1.72
HMGB1P23-201ENST00000518743 COL27A1Q8IZC6 1860 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 STK36Q9NRP7 1315 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 CITO14578 2027 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 CHD3Q12873 2000 aaKnown RBP4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 UNC13CQ8NB66 2214 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 MTMR11A4FU01 709 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 ARHGAP42A6NI28 874 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 F8VVB4 439 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 F8VWA3 439 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 TLR4O00206 839 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 PPEF2O14830 753 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 CHMP2AO43633 222 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 LRCH4O75427 683 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 SORBS2O94875 1100 aaKnown RBP4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 KDM4BO94953 1096 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 GAS8O95995 478 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 SMIM18P0DKX4 95 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 LBPP18428 481 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 ATF6P18850 670 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 CD82P27701 267 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 OR3A3P47888 321 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 TUFMP49411 452 aaKnown RBP4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 VAMP7P51809 220 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 GSDMDP57764 484 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 GMFBP60983 142 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 HAND2P61296 217 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 LAMTOR4Q0VGL1 99 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 DMP1Q13316 513 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 SLC39A14Q15043 492 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 RABEP1Q15276 862 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 UGT3A2Q3SY77 523 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 CCDC40Q4G0X9 1142 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 CEP55Q53EZ4 464 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 IRAK1BP1Q5VVH5 260 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 PRAMEF8Q5VWM4 474 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 OR4A47Q6IF82 309 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 ARMCX5Q6P1M9 558 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 GUSBP11Q6P575 273 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZNF554Q86TJ5 538 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 PLA2G4DQ86XP0 818 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 LGI2Q8N0V4 545 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 CLIP4Q8N3C7 705 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 BMPERQ8N8U9 685 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 CCDC63Q8NA47 563 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 STKLD1Q8NE28 680 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 EXOC6Q8TAG9 804 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 LRRC8CQ8TDW0 803 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 ESR2Q92731 530 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 TSACCQ96A04 125 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 TMEM143Q96AN5 459 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZG16BQ96DA0 208 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 HMCESQ96FZ2 354 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 SCMH1Q96GD3 660 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 SERAC1Q96JX3 654 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 TSSK2Q96PF2 358 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZNF577Q9BSK1 485 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 CXCL16Q9H2A7 254 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 LHX5Q9H2C1 402 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 GPN2Q9H9Y4 310 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZNF701Q9NV72 531 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 TAS2R3Q9NYW6 316 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 UBQLN2Q9UHD9 624 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 ZDHHC2Q9UIJ5 367 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 SLC7A7Q9UM01 511 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 WDR83OSQ9Y284 106 aa4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 MDC1Q14676 2089 aaKnown RBP4.28□□□□□ -1.72
HMGB1P23-201ENST00000518743 RYR3Q15413 4870 aa4.27□□□□□ -1.73
HMGB1P23-201ENST00000518743 A0A1W2PPK0 400 aa4.27□□□□□ -1.73
HMGB1P23-201ENST00000518743 E9PI62 339 aa4.27□□□□□ -1.73
HMGB1P23-201ENST00000518743 H3BNX3 289 aa4.27□□□□□ -1.73
HMGB1P23-201ENST00000518743 TMX2-CTNND1H3BSU7 103 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms