RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TLE4Q04727 773 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 INCA1Q0VD86 236 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SLBPQ14493 270 aaKnown RBP eCLIP3.88□□□□□ -1.79
USH2A-202ENST00000366942 CASP8Q14790 479 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 C15orf59Q2T9L4 293 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 PAN3Q58A45 887 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 IER5LQ5T953 404 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SEL1L3Q68CR1 1132 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SPOCD1Q6ZMY3 1216 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ADGRA1Q86SQ6 560 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 NLRP14Q86W24 1093 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CHERPQ8IWX8 916 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 LAS2Q8IYD9 372 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 MUC20Q8N307 709 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 LNX2Q8N448 690 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 METTL27Q8N6F8 245 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 C12orf29Q8N999 325 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 TMEM161BQ8NDZ6 487 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ZSWIM2Q8NEG5 633 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ITFG1Q8TB96 612 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 UTP15Q8TED0 518 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 SLC35F5Q8WV83 523 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 TRIM43Q96BQ3 446 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 TBC1D20Q96BZ9 403 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 MAPKAP1Q9BPZ7 522 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 PIGMQ9H3S5 423 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 DNMT3BQ9UBC3 853 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 MAN1B1Q9UKM7 699 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 NCOR1O75376 2440 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 A0A096LPI6 279 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 PRR19A6NJB7 356 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 AGAP14A8MT82 685 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 UBDO15205 165 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 HOXC11O43248 304 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 FAM87AP0C7U9 286 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 XRCC1P18887 633 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 MAP2K3P46734 347 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 OTUD4Q01804 1114 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 KLHL12Q53G59 568 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 FAM27D1Q5T7N8 215 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SHEQ5VZ18 495 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SLC6A19Q695T7 634 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 PLXDC2Q6UX71 529 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 GDPD3Q7L5L3 318 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 LRRC70Q7Z2Q7 622 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 SMYD4Q8IYR2 804 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 PRELID2Q8N945 189 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CHST4Q8NCG5 386 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 WBP2Q969T9 261 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 EME1Q96AY2 570 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ZBTB45Q96K62 511 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 CNBD2Q96M20 576 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 KCNJ15Q99712 375 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 DPH7Q9BTV6 452 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 RBM24Q9BX46 236 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 HINT2Q9BX68 163 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 TFB2MQ9H5Q4 396 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 KLHL42Q9P2K6 505 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SPO11Q9Y5K1 396 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 INTS1Q8N201 2190 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 CNOT1A5YKK6 2376 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 KDM5AP29375 1690 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 NDUFB3O43676 98 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 OR10H3O60404 316 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CXCL10P02778 98 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ZNF728P0DKX0 622 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 TBXA2RP21731 343 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 NUMBP49757 651 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 PSMD7P51665 324 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CARD18P57730 90 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 HBA1P69905 142 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 HTR4Q13639 388 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 EGFLAMQ63HQ2 1017 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ZNF549Q6P9A3 640 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ARCQ7LC44 396 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SERPINA12Q8IW75 414 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 TMEM217Q8N7C4 229 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 GLB1L3Q8NCI6 653 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 C15orf40Q8WUR7 153 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CCDC115Q96NT0 180 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 RBM4Q9BWF3 364 aaKnown RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 GRHPRQ9UBQ7 328 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 MARCOQ9UEW3 520 aaPredicted RBP3.88□□□□□ -1.79
USH2A-202ENST00000366942 STEAP1Q9UHE8 339 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 LAMP5Q9UJQ1 280 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 GJD2Q9UKL4 321 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SSR3Q9UNL2 185 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 SNX24Q9Y343 169 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 BCORL1Q5H9F3 1711 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 ZNF816-ZNF321PA0A0X1KG74 233 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 FAM172BPA6NC97 362 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 VNN1O95497 513 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CCNE2O96020 404 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 RLN2P04090 185 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 GPIP06744 558 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CT45A6P0DMU7 189 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CT45A5P0DMU8 189 aa3.88□□□□□ -1.79
USH2A-202ENST00000366942 CT45A7P0DMV0 189 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms