RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 IQCHQ86VS3 1027 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 OR9A2Q8NGT5 310 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 CCL4L1Q8NHW4 92 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 KAT2AQ92830 837 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 GPA33Q99795 319 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 FUZQ9BT04 418 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 ENTPD4Q9Y227 616 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 KRBA1A5PL33 1030 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 PRR19A6NJB7 356 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 BTN3A3O00478 584 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 ASGR2P07307 311 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 COL9A1P20849 921 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 MMP11P24347 488 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 TEAD1P28347 426 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 SLC15A1P46059 708 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 BTN3A2P78410 334 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 LTB4RQ15722 352 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 SLX4IPQ5VYV7 408 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 MRM1Q6IN84 353 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 ZNF367Q7RTV3 350 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 ZER1Q7Z7L7 766 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 CDADC1Q9BWV3 514 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 C6orf106Q9H6K1 298 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 SLC25A19Q9HC21 320 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 MAN2C1Q9NTJ4 1040 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 CNOT2Q9NZN8 540 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 PCDHGA4Q9Y5G9 962 aa17.29■□□□□ 0.36
SHKBP1-201ENST00000291842 USP34Q70CQ2 3546 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 ARHGAP33O14559 1287 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 TP53P04637 393 aaPredicted RBP17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 SOX3P41225 446 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 TJAP1Q5JTD0 557 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 SLC34A3Q8N130 599 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 OR4K5Q8NGD3 323 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 LCN9Q8WX39 176 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 ABCB10Q9NRK6 738 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 SLC9A8Q9Y2E8 581 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 PRSS38A1L453 326 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 TLX2O43763 284 aaPredicted RBP17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 LAMP2P13473 410 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 CMPK1P30085 196 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 CD300CQ08708 224 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 SSX1Q16384 188 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 TMEM31Q5JXX7 168 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 C12orf73Q69YU5 71 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 SLC48A1Q6P1K1 146 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 ENPP7Q6UWV6 458 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 CYP4Z2PQ8N1L4 340 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 SLC6A18Q96N87 628 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 NEURL2Q9BR09 285 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 MMP27Q9H306 513 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 RMI1Q9H9A7 625 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 DZANK1Q9NVP4 752 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 CES1P1Q9UKY3 287 aa17.28■□□□□ 0.36
SHKBP1-201ENST00000291842 PRKYO43930 277 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 KIAA0513O60268 411 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 ADAM23O75077 832 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 F3P13726 295 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 CD40LGP29965 261 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 AHRP35869 848 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 SNRPGP62308 76 aaKnown RBP17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 OLR1P78380 273 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 HOXC5Q00444 222 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 TPRG1LQ5T0D9 272 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 PAQR6Q6TCH4 344 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 TRIM73Q86UV7 250 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 AMIGO1Q86WK6 493 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 AMER2Q8N7J2 671 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 C9orf43Q8TAL5 461 aaPredicted RBP17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 BBS10Q8TAM1 723 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 TSACCQ96A04 125 aaPredicted RBP17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 ZSCAN32Q9NX65 697 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 QPCTLQ9NXS2 382 aa17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 GPR55Q9Y2T6 319 aaPredicted RBP17.27■□□□□ 0.36
SHKBP1-201ENST00000291842 A0A1W2PRQ8 180 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 PROM1O43490 865 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 LGI1O95970 557 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 CHRM5P08912 532 aaPredicted RBP17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 CSNK2A2P19784 350 aaPredicted RBP17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 NTSR1P30989 418 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 PPP5CP53041 499 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 SMIM11AP58511 58 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 ABATP80404 500 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 CHRNEQ04844 493 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 ANKRD54Q6NXT1 300 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 ATCAYQ86WG3 371 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 VRK2Q86Y07 508 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 KBTBD8Q8NFY9 601 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 OR1E3Q8WZA6 343 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 COL26A1Q96A83 441 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 ELSPBP1Q96BH3 223 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 OR7D2Q96RA2 312 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 KLHL25Q9H0H3 589 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 NKX2-4Q9H2Z4 354 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 FHP07954 510 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 TGM1P22735 817 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 SEPHS1P49903 392 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 ZNF91Q05481 1191 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 SLC22A16Q86VW1 577 aa17.26■□□□□ 0.35
SHKBP1-201ENST00000291842 IL17RCQ8NAC3 791 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms