RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SAR1AQ9NR31 198 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 FAM120CQ9NX05 1096 aaKnown RBP27.56■■■□□ 2
LIMCH1-211ENST00000509638 BOD1L1Q8NFC6 3051 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 NR5A2O00482 541 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 C6orf47O95873 294 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 CDK9P50750 372 aaKnown RBP27.56■■■□□ 2
LIMCH1-211ENST00000509638 CLCN2P51788 898 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 AP2B1P63010 937 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 FUT7Q11130 342 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 TBR1Q16650 682 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 TRMT12Q53H54 448 aaKnown RBP27.56■■■□□ 2
LIMCH1-211ENST00000509638 FUNDC1Q8IVP5 155 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 CLECL1Q8IZS7 167 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 CPSF7Q8N684 471 aaKnown RBP27.56■■■□□ 2
LIMCH1-211ENST00000509638 OR7G2Q8NG99 324 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 EXTL1Q92935 676 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 OR52E6Q96RD3 313 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 ANKRA2Q9H9E1 313 aa27.56■■■□□ 2
LIMCH1-211ENST00000509638 A6NL46 340 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 RNASET2O00584 256 aaKnown RBP27.55■■■□□ 2
LIMCH1-211ENST00000509638 SLITRK5O94991 958 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 CLPSP04118 112 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 ITGB2P05107 769 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 IL6P05231 212 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 RAPSNQ13702 412 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 EXOSC7Q15024 291 aaKnown RBP27.55■■■□□ 2
LIMCH1-211ENST00000509638 MLC1Q15049 377 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 ANXA8L1Q5VT79 327 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 RNF111Q6ZNA4 994 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 SIMC1Q8NDZ2 872 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 BRIX1Q8TDN6 353 aaKnown RBP27.55■■■□□ 2
LIMCH1-211ENST00000509638 LHPPQ9H008 270 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 ZNF639Q9UID6 485 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 CPAMD8Q8IZJ3 1885 aa27.55■■■□□ 2
LIMCH1-211ENST00000509638 CBX7O95931 251 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 S1PR1P21453 382 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 CCL11P51671 97 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 SLC37A1P57057 533 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 KCNK10P57789 538 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 IRAK1BP1Q5VVH5 260 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 MTERF4Q7Z6M4 381 aaKnown RBP27.54■■■□□ 2
LIMCH1-211ENST00000509638 OR5P2Q8WZ92 322 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 VPS33AQ96AX1 596 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 NEUROD4Q9HD90 331 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 MRGBPQ9NV56 204 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 TMEM45AQ9NWC5 275 aa27.54■■■□□ 2
LIMCH1-211ENST00000509638 CFLARO15519 480 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 SCN2BO60939 215 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 ABCB1P08183 1280 aaPredicted RBP27.53■■■□□ 2
LIMCH1-211ENST00000509638 CD1EP15812 388 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 BLOC1S3Q6QNY0 202 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 HSDL2Q6YN16 418 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 GK5Q6ZS86 529 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 SIRT6Q8N6T7 355 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 VPS37AQ8NEZ2 397 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 ERP27Q96DN0 273 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 SIRT3Q9NTG7 399 aaPredicted RBP27.53■■■□□ 2
LIMCH1-211ENST00000509638 DDX18Q9NVP1 670 aaKnown RBP27.53■■■□□ 2
LIMCH1-211ENST00000509638 SDAD1Q9NVU7 687 aaKnown RBP eCLIP27.53■■■□□ 2
LIMCH1-211ENST00000509638 GPR83Q9NYM4 423 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 PIEZO2Q9H5I5 2752 aa27.53■■■□□ 2
LIMCH1-211ENST00000509638 PRSS51A0A1B0GVH4 220 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 FCHO1O14526 889 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 PLOD3O60568 738 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 SOX8P57073 446 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 HBA1P69905 142 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 DUSP8Q13202 625 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 FHL5Q5TD97 284 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 JMJD6Q6NYC1 403 aaPredicted RBP27.52■■■□□ 2
LIMCH1-211ENST00000509638 C9orf40Q8IXQ3 194 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 OR7G1Q8NGA0 311 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 OR52R1Q8NGF1 315 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 ELP4Q96EB1 424 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 MAGED4Q96JG8 741 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 OR10A5Q9H207 317 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 PTGFRNQ9P2B2 879 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 BCAP29Q9UHQ4 241 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 ARL2BPQ9Y2Y0 163 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 PLOD2O00469 737 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 PRKNO60260 465 aaPredicted RBP27.52■■■□□ 2
LIMCH1-211ENST00000509638 PRAMEF2O60811 474 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 MYBPC3Q14896 1274 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 GKAP1Q5VSY0 366 aaPredicted RBP27.52■■■□□ 2
LIMCH1-211ENST00000509638 ZNF615Q8N8J6 731 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 OR4A15Q8NGL6 344 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 SPDL1Q96EA4 605 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 DEFB126Q9BYW3 111 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 ARMCX1Q9P291 453 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 SNX8Q9Y5X2 465 aa27.52■■■□□ 2
LIMCH1-211ENST00000509638 A0A087WV62 115 aa27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 CAPN3P20807 821 aa27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 POLE2P56282 527 aa27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 SZRD1Q7Z422 152 aa27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 MTDHQ86UE4 582 aaKnown RBP27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 OR2L13Q8N349 312 aa27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 FDCSPQ8NFU4 85 aa27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 PSMA8Q8TAA3 256 aa27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 THAP3Q8WTV1 239 aaPredicted RBP27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 PSMF1Q92530 271 aa27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 CCDC115Q96NT0 180 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms