RNA–Protein interactions for RNA: ENST00000437100.5

CPNE1-215, Transcript of copine 1, human

TSL 5

Gene CPNE1, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-215	ENST00000437100		A0A087WV62	115 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	GMNC	A6NCL1	334 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100		A6NL46	340 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	OR6C76	A6NM76	312 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	MKRN2OS	H3BPM6	223 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	RNASET2	O00584	256 aa	Known RBP	13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	SLC22A3	O75751	556 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	PDGFA	P04085	211 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	FAM87A	P0C7U9	286 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	KIR3DL1	P43629	444 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	ARFIP2	P53365	341 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	NME5	P56597	212 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	RNF4	P78317	190 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	MRPS35	P82673	323 aa	Known RBP	13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	KCNAB2	Q13303	367 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	SQLE	Q14534	574 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	EBP	Q15125	230 aa	Known RBP	13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	TRMT12	Q53H54	448 aa	Known RBP	13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	CRB2	Q5IJ48	1285 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	B3GNTL1	Q67FW5	361 aa	Predicted RBP	13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	PAOX	Q6QHF9	649 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	HSDL2	Q6YN16	418 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	ZNF551	Q7Z340	670 aa	Predicted RBP	13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	OR2L13	Q8N349	312 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	SLC5A8	Q8N695	610 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	ZNF441	Q8N8Z8	693 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	SIMC1	Q8NDZ2	872 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	OR7G2	Q8NG99	324 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	OR9I1	Q8NGQ6	314 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	ZFP28	Q8NHY6	868 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	NUBPL	Q8TB37	319 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	OR5P2	Q8WZ92	322 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	KAT2A	Q92830	837 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	ELP4	Q96EB1	424 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	SIRT3	Q9NTG7	399 aa	Predicted RBP	13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	NTM	Q9P121	344 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	COPS7A	Q9UBW8	275 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	G3BP2	Q9UN86	482 aa	Known RBP	13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	ERVK-11	Q9UQG0	969 aa		13.72	□□□□□ -0.21
CPNE1-215	ENST00000437100	DOCK10	Q96BY6	2186 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100		A0A1W2PRB8	838 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100		C9JVG2	144 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100		K7EM74	188 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	UPK1A	O00322	258 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	MAN1A2	O60476	641 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	SHOX2	O60902	331 aa	Predicted RBP	13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	ZFAND5	O76080	213 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	MC3R	P41968	323 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	CDK9	P50750	372 aa	Known RBP	13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	MLF1	P58340	268 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	RAPSN	Q13702	412 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	RPS6KA2	Q15349	733 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	FAM174B	Q3ZCQ3	159 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	AGAP7P	Q5VUJ5	663 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	OR4F3	Q6IEY1	312 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	TCTN3	Q6NUS6	607 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	TMEM107	Q6UX40	140 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	RNF111	Q6ZNA4	994 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	FUNDC1	Q8IVP5	155 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	CPSF7	Q8N684	471 aa	Known RBP	13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	SIRT6	Q8N6T7	355 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	OR52R1	Q8NGF1	315 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	ABHD17A	Q96GS6	310 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	AGAP4	Q96P64	663 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	SLC25A23	Q9BV35	468 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	DEFB126	Q9BYW3	111 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	OR10A5	Q9H207	317 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	SLC52A3	Q9NQ40	469 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	13.71	□□□□□ -0.21	9e-7	■□□□□ 11
CPNE1-215	ENST00000437100	FAM120C	Q9NX05	1096 aa	Known RBP	13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	PTGFRN	Q9P2B2	879 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	C19orf53	Q9UNZ5	99 aa	Predicted RBP	13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	LHX6	Q9UPM6	363 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	TRIM33	Q9UPN9	1127 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	PCDHGB7	Q9Y5F8	929 aa		13.71	□□□□□ -0.21
CPNE1-215	ENST00000437100	ZFYVE26	Q68DK2	2539 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	SNX3	O60493	162 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	PRAMEF2	O60811	474 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	BCAS2	O75934	225 aa	Predicted RBP	13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	IL6	P05231	212 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	PGR	P06401	933 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	EMD	P50402	254 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	DGKQ	P52824	942 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	MANF	P55145	182 aa	Known RBP	13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	STX1B	P61266	288 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	HSPB3	Q12988	150 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	MFAP5	Q13361	173 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	RCAN2	Q14206	197 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	EXOSC7	Q15024	291 aa	Known RBP	13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	PGS1	Q32NB8	556 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	C6orf163	Q5TEZ5	329 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	ANXA8L1	Q5VT79	327 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	IRAK1BP1	Q5VVH5	260 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	IGFL3	Q6UXB1	125 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	ISLR2	Q6UXK2	745 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	TMEM64	Q6YI46	380 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	SPATA21	Q7Z572	469 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	C16orf52	Q8NHV5	167 aa		13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	HOXB13	Q92826	284 aa	Predicted RBP	13.7	□□□□□ -0.22
CPNE1-215	ENST00000437100	ADIPOR1	Q96A54	375 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms