RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 NUTM1Q86Y26 1132 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 COG7P83436 770 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 SELENOSQ9BQE4 189 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 SLC8A1P32418 973 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 PANK2Q9BZ23 570 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 TBC1D2BQ9UPU7 963 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 CCDC69A6NI79 296 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 CCDC96Q2M329 555 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 WASF1Q92558 559 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 NUF2Q9BZD4 464 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 PRC1O43663 620 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 TSG101Q99816 390 aa17.22■□□□□ 0.35
COL5A1-208ENST00000618395 CCDC40Q4G0X9 1142 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 FAM160A1Q05DH4 1040 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 CEP104O60308 925 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 GNAI3P08754 354 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 RUFY3Q7L099 469 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 PLVAPQ9BX97 442 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 RNF8O76064 485 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 U2AF2P26368 475 aaKnown RBP eCLIP17.21■□□□□ 0.35
COL5A1-208ENST00000618395 NACADO15069 1562 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 DMTNQ08495 405 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 FLIIQ13045 1269 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 ZSCAN26Q16670 478 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 CCDC77Q9BR77 488 aa17.21■□□□□ 0.35
COL5A1-208ENST00000618395 LRRC45Q96CN5 670 aa17.21■□□□□ 0.34
COL5A1-208ENST00000618395 BAZ1AQ9NRL2 1556 aaPredicted RBP17.21■□□□□ 0.34
COL5A1-208ENST00000618395 PDCD7Q8N8D1 485 aaKnown RBP17.2■□□□□ 0.34
COL5A1-208ENST00000618395 NOP2P46087 812 aaKnown RBP17.2■□□□□ 0.34
COL5A1-208ENST00000618395 RNF216Q9NWF9 866 aaPredicted RBP17.2■□□□□ 0.34
COL5A1-208ENST00000618395 VEZTQ9HBM0 779 aa17.2■□□□□ 0.34
COL5A1-208ENST00000618395 VAV2P52735 878 aa17.2■□□□□ 0.34
COL5A1-208ENST00000618395 SPTY2D1Q68D10 685 aaPredicted RBP17.2■□□□□ 0.34
COL5A1-208ENST00000618395 TBC1D2Q9BYX2 928 aa17.2■□□□□ 0.34
COL5A1-208ENST00000618395 TRIM21P19474 475 aaKnown RBP17.2■□□□□ 0.34
COL5A1-208ENST00000618395 MYRIPQ8NFW9 859 aa17.2■□□□□ 0.34
COL5A1-208ENST00000618395 SEC62Q99442 399 aaKnown RBP17.2■□□□□ 0.34
COL5A1-208ENST00000618395 CCDC30Q5VVM6 783 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 NECTIN2Q92692 538 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 BAG4O95429 457 aaKnown RBP17.19■□□□□ 0.34
COL5A1-208ENST00000618395 HCLS1P14317 486 aaPredicted RBP17.19■□□□□ 0.34
COL5A1-208ENST00000618395 SSFA2P28290 1259 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 EFCC1Q9HA90 598 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 MTUS1Q9ULD2 1270 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 EID1Q9Y6B2 187 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 CPLX3Q8WVH0 158 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 SMIM24O75264 130 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 CNPY4Q8N129 248 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 GSDMBQ8TAX9 411 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 JAKMIP1Q96N16 626 aaKnown RBP17.19■□□□□ 0.34
COL5A1-208ENST00000618395 MGEA5O60502 916 aa17.19■□□□□ 0.34
COL5A1-208ENST00000618395 ERO1AQ96HE7 468 aa17.18■□□□□ 0.34
COL5A1-208ENST00000618395 UACAQ9BZF9 1416 aa17.18■□□□□ 0.34
COL5A1-208ENST00000618395 SURF6O75683 361 aaKnown RBP17.18■□□□□ 0.34
COL5A1-208ENST00000618395 MAP3K7CLP57077 242 aa17.18■□□□□ 0.34
COL5A1-208ENST00000618395 IKQ13123 557 aaPredicted RBP17.18■□□□□ 0.34
COL5A1-208ENST00000618395 LRRD1A4D1F6 860 aa17.18■□□□□ 0.34
COL5A1-208ENST00000618395 SH2B1Q9NRF2 756 aaPredicted RBP17.18■□□□□ 0.34
COL5A1-208ENST00000618395 GNAI2P04899 355 aa17.17■□□□□ 0.34
COL5A1-208ENST00000618395 GOLGA6CA6NDK9 693 aa17.17■□□□□ 0.34
COL5A1-208ENST00000618395 GOLGA6DP0CG33 693 aa17.17■□□□□ 0.34
COL5A1-208ENST00000618395 GOLGA6AQ9NYA3 693 aa17.17■□□□□ 0.34
COL5A1-208ENST00000618395 EPSTI1Q96J88 318 aa17.17■□□□□ 0.34
COL5A1-208ENST00000618395 UBASH3AP57075 661 aa17.17■□□□□ 0.34
COL5A1-208ENST00000618395 PPP2R5AQ15172 486 aa17.17■□□□□ 0.34
COL5A1-208ENST00000618395 ARHGAP24Q8N264 748 aa17.17■□□□□ 0.34
COL5A1-208ENST00000618395 MRFAP1Q9Y605 127 aa17.17■□□□□ 0.34
COL5A1-208ENST00000618395 CHMP2AO43633 222 aa17.16■□□□□ 0.34
COL5A1-208ENST00000618395 TTC5Q8N0Z6 440 aa17.16■□□□□ 0.34
COL5A1-208ENST00000618395 TTC12Q9H892 705 aaPredicted RBP17.16■□□□□ 0.34
COL5A1-208ENST00000618395 MUM1Q2TAK8 710 aa17.16■□□□□ 0.34
COL5A1-208ENST00000618395 CNNM3Q8NE01 707 aa17.16■□□□□ 0.34
COL5A1-208ENST00000618395 ZKSCAN8Q15776 578 aaPredicted RBP17.16■□□□□ 0.34
COL5A1-208ENST00000618395 CERS3Q8IU89 383 aa17.16■□□□□ 0.34
COL5A1-208ENST00000618395 CCDC7Q96M83 1385 aa17.16■□□□□ 0.34
COL5A1-208ENST00000618395 UBAC1Q9BSL1 405 aa17.16■□□□□ 0.34
COL5A1-208ENST00000618395 KIF5AQ12840 1032 aa17.16■□□□□ 0.34
COL5A1-208ENST00000618395 LTV1Q96GA3 475 aaPredicted RBP17.16■□□□□ 0.34
COL5A1-208ENST00000618395 DIAPH1O60610 1272 aaKnown RBP17.15■□□□□ 0.34
COL5A1-208ENST00000618395 ATP5DP30049 168 aa17.15■□□□□ 0.34
COL5A1-208ENST00000618395 ARHGEF2Q92974 986 aaKnown RBP17.15■□□□□ 0.34
COL5A1-208ENST00000618395 FAF1Q9UNN5 650 aaPredicted RBP17.15■□□□□ 0.34
COL5A1-208ENST00000618395 RBM27Q9P2N5 1060 aaKnown RBP17.15■□□□□ 0.34
COL5A1-208ENST00000618395 MTMR7Q9Y216 660 aa17.15■□□□□ 0.34
COL5A1-208ENST00000618395 CCDC196A0A1B0GTZ2 297 aa17.15■□□□□ 0.34
COL5A1-208ENST00000618395 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.15■□□□□ 0.34
COL5A1-208ENST00000618395 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.15■□□□□ 0.34
COL5A1-208ENST00000618395 XAB2Q9HCS7 855 aaKnown RBP17.15■□□□□ 0.34
COL5A1-208ENST00000618395 BICDL2A1A5D9 508 aa17.15■□□□□ 0.34
COL5A1-208ENST00000618395 NLRP5P59047 1200 aa17.15■□□□□ 0.34
COL5A1-208ENST00000618395 LRRC43Q8N309 656 aa17.14■□□□□ 0.34
COL5A1-208ENST00000618395 USP6NLQ92738 828 aa17.14■□□□□ 0.34
COL5A1-208ENST00000618395 RAB3IPQ96QF0 476 aaPredicted RBP17.14■□□□□ 0.34
COL5A1-208ENST00000618395 VIMP08670 466 aaKnown RBP17.14■□□□□ 0.33
COL5A1-208ENST00000618395 CYLC1P35663 651 aaPredicted RBP17.14■□□□□ 0.33
COL5A1-208ENST00000618395 CARMIL2Q6F5E8 1435 aa17.14■□□□□ 0.33
COL5A1-208ENST00000618395 SF3B2Q13435 895 aaKnown RBP17.14■□□□□ 0.33
COL5A1-208ENST00000618395 RAB11FIP4Q86YS3 637 aa17.14■□□□□ 0.33
COL5A1-208ENST00000618395 RASEFQ8IZ41 740 aa17.14■□□□□ 0.33
COL5A1-208ENST00000618395 CTAGE1Q96RT6 745 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms