RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 U2SURPO15042 1029 aaKnown RBP8.42□□□□□ -1.06
CUX1-220ENST00000607092 GRIPAP1Q4V328 841 aa8.42□□□□□ -1.06
CUX1-220ENST00000607092 CCDC93Q567U6 631 aa8.42□□□□□ -1.06
CUX1-220ENST00000607092 TBC1D9BQ66K14 1250 aa8.42□□□□□ -1.06
CUX1-220ENST00000607092 TPTE2Q6XPS3 522 aa8.42□□□□□ -1.06
CUX1-220ENST00000607092 PNMA8AQ86V59 439 aaPredicted RBP8.42□□□□□ -1.06
CUX1-220ENST00000607092 LDHDQ86WU2 507 aa8.42□□□□□ -1.06
CUX1-220ENST00000607092 DZIP3Q86Y13 1208 aaKnown RBP8.42□□□□□ -1.06
CUX1-220ENST00000607092 RTF1Q92541 710 aaKnown RBP8.42□□□□□ -1.06
CUX1-220ENST00000607092 ZNF496Q96IT1 587 aaPredicted RBP8.42□□□□□ -1.06
CUX1-220ENST00000607092 L3MBTL3Q96JM7 780 aaPredicted RBP8.42□□□□□ -1.06
CUX1-220ENST00000607092 AFDNP55196 1824 aaKnown RBP8.42□□□□□ -1.06
CUX1-220ENST00000607092 UBR2Q8IWV8 1755 aa8.41□□□□□ -1.06
CUX1-220ENST00000607092 TIAM2Q8IVF5 1701 aa8.41□□□□□ -1.06
CUX1-220ENST00000607092 BTBD11A6QL63 1104 aa8.41□□□□□ -1.06
CUX1-220ENST00000607092 NEFMP07197 916 aa8.41□□□□□ -1.06
CUX1-220ENST00000607092 SRGNP10124 158 aa8.41□□□□□ -1.06
CUX1-220ENST00000607092 NPR1P16066 1061 aa8.41□□□□□ -1.06
CUX1-220ENST00000607092 ALDH1B1P30837 517 aa8.41□□□□□ -1.06
CUX1-220ENST00000607092 MKRN4PQ13434 485 aaPredicted RBP8.41□□□□□ -1.06
CUX1-220ENST00000607092 CC2D2BQ6DHV5 1058 aa8.41□□□□□ -1.06
CUX1-220ENST00000607092 PRPF40BQ6NWY9 871 aaKnown RBP8.41□□□□□ -1.06
CUX1-220ENST00000607092 NBPF5PQ86XG9 351 aaPredicted RBP8.41□□□□□ -1.06
CUX1-220ENST00000607092 RTKN2Q8IZC4 609 aa8.41□□□□□ -1.06
CUX1-220ENST00000607092 CCER1Q8TC90 406 aaPredicted RBP8.41□□□□□ -1.06
CUX1-220ENST00000607092 TBC1D2BQ9UPU7 963 aa8.41□□□□□ -1.06
CUX1-220ENST00000607092 CEMIPQ8WUJ3 1361 aa8.4□□□□□ -1.06
CUX1-220ENST00000607092 KIF7Q2M1P5 1343 aa8.4□□□□□ -1.06
CUX1-220ENST00000607092 HTATSF1O43719 755 aaKnown RBP8.4□□□□□ -1.06
CUX1-220ENST00000607092 SNRPA1P09661 255 aaKnown RBP8.4□□□□□ -1.06
CUX1-220ENST00000607092 GTF2E1P29083 439 aaPredicted RBP8.4□□□□□ -1.06
CUX1-220ENST00000607092 IL17REQ8NFR9 667 aa8.4□□□□□ -1.06
CUX1-220ENST00000607092 TMX4Q9H1E5 349 aaPredicted RBP8.4□□□□□ -1.06
CUX1-220ENST00000607092 PRDM10Q9NQV6 1147 aa8.4□□□□□ -1.06
CUX1-220ENST00000607092 SCN7AQ01118 1682 aa8.4□□□□□ -1.07
CUX1-220ENST00000607092 TMEM88BA6NKF7 163 aa8.39□□□□□ -1.07
CUX1-220ENST00000607092 POTECB2RU33 542 aa8.39□□□□□ -1.07
CUX1-220ENST00000607092 PER1O15534 1290 aaPredicted RBP8.39□□□□□ -1.07
CUX1-220ENST00000607092 CAPN15O75808 1086 aa8.39□□□□□ -1.07
CUX1-220ENST00000607092 CAMTA2O94983 1202 aa8.39□□□□□ -1.07
CUX1-220ENST00000607092 CTCFP49711 727 aaPredicted RBP8.39□□□□□ -1.07
CUX1-220ENST00000607092 FKBP4Q02790 459 aaKnown RBP eCLIP8.39□□□□□ -1.07
CUX1-220ENST00000607092 JDP2Q8WYK2 163 aa8.39□□□□□ -1.07
CUX1-220ENST00000607092 NYXQ9GZU5 481 aa8.39□□□□□ -1.07
CUX1-220ENST00000607092 HACL1Q9UJ83 578 aa8.39□□□□□ -1.07
CUX1-220ENST00000607092 DICER1Q9UPY3 1922 aaKnown RBP8.39□□□□□ -1.07
CUX1-220ENST00000607092 CNTNAP1P78357 1384 aa8.38□□□□□ -1.07
CUX1-220ENST00000607092 KLRG2A4D1S0 409 aaPredicted RBP8.38□□□□□ -1.07
CUX1-220ENST00000607092 DDNO94850 711 aaPredicted RBP8.38□□□□□ -1.07
CUX1-220ENST00000607092 MAP2K1Q02750 393 aaPredicted RBP8.38□□□□□ -1.07
CUX1-220ENST00000607092 CC2D1BQ5T0F9 858 aaKnown RBP8.38□□□□□ -1.07
CUX1-220ENST00000607092 PNISRQ8TF01 805 aaKnown RBP8.38□□□□□ -1.07
CUX1-220ENST00000607092 TAF1DQ9H5J8 278 aaPredicted RBP8.38□□□□□ -1.07
CUX1-220ENST00000607092 MKRN1Q9UHC7 482 aaKnown RBP8.38□□□□□ -1.07
CUX1-220ENST00000607092 FBXO3Q9UK99 471 aa8.38□□□□□ -1.07
CUX1-220ENST00000607092 FER1L6Q2WGJ9 1857 aa8.38□□□□□ -1.07
CUX1-220ENST00000607092 SCN4AP35499 1836 aa8.38□□□□□ -1.07
CUX1-220ENST00000607092 PASKQ96RG2 1323 aa8.37□□□□□ -1.07
CUX1-220ENST00000607092 A1BGP04217 495 aa8.37□□□□□ -1.07
CUX1-220ENST00000607092 LMOD1P29536 600 aaPredicted RBP8.37□□□□□ -1.07
CUX1-220ENST00000607092 GPC2Q8N158 579 aa8.37□□□□□ -1.07
CUX1-220ENST00000607092 C7orf43Q8WVR3 580 aa8.37□□□□□ -1.07
CUX1-220ENST00000607092 PSMD1Q99460 953 aa8.37□□□□□ -1.07
CUX1-220ENST00000607092 NIP7Q9Y221 180 aaKnown RBP eCLIP8.37□□□□□ -1.072e-10■■■■■ 60.1
CUX1-220ENST00000607092 CLEC11AQ9Y240 323 aa8.37□□□□□ -1.07
CUX1-220ENST00000607092 PRKAR2BP31323 418 aa8.36□□□□□ -1.07
CUX1-220ENST00000607092 EPHX2P34913 555 aa8.36□□□□□ -1.07
CUX1-220ENST00000607092 EIF6P56537 245 aaKnown RBP8.36□□□□□ -1.07
CUX1-220ENST00000607092 EAPPQ56P03 285 aaPredicted RBP8.36□□□□□ -1.07
CUX1-220ENST00000607092 BEGAINQ9BUH8 593 aa8.36□□□□□ -1.07
CUX1-220ENST00000607092 PNNQ9H307 717 aaKnown RBP8.36□□□□□ -1.07
CUX1-220ENST00000607092 CCDC88AQ3V6T2 1871 aa8.36□□□□□ -1.07
CUX1-220ENST00000607092 ANKRD31Q8N7Z5 1873 aa8.36□□□□□ -1.07
CUX1-220ENST00000607092 VIRMAQ69YN4 1812 aaKnown RBP8.36□□□□□ -1.07
CUX1-220ENST00000607092 ARFGEF2Q9Y6D5 1785 aa8.35□□□□□ -1.07
CUX1-220ENST00000607092 COL3A1P02461 1466 aaPredicted RBP8.35□□□□□ -1.07
CUX1-220ENST00000607092 ERVV-1B6SEH8 477 aa8.35□□□□□ -1.07
CUX1-220ENST00000607092 U2AF1L5P0DN76 240 aaPredicted RBP8.35□□□□□ -1.07
CUX1-220ENST00000607092 IARSP41252 1262 aaKnown RBP8.35□□□□□ -1.07
CUX1-220ENST00000607092 ECE1P42892 770 aa8.35□□□□□ -1.07
CUX1-220ENST00000607092 U2AF1Q01081 240 aaKnown RBP eCLIP8.35□□□□□ -1.07
CUX1-220ENST00000607092 TAF7Q15545 349 aaPredicted RBP8.35□□□□□ -1.07
CUX1-220ENST00000607092 DEFB115Q30KQ5 88 aa8.35□□□□□ -1.07
CUX1-220ENST00000607092 VPS33BQ9H267 617 aa8.35□□□□□ -1.07
CUX1-220ENST00000607092 SPINK5Q9NQ38 1064 aaPredicted RBP8.35□□□□□ -1.07
CUX1-220ENST00000607092 USP16Q9Y5T5 823 aa8.35□□□□□ -1.07
CUX1-220ENST00000607092 IBTKQ9P2D0 1353 aaPredicted RBP8.35□□□□□ -1.07
CUX1-220ENST00000607092 RASSF10A6NK89 507 aa8.34□□□□□ -1.07
CUX1-220ENST00000607092 FZD9O00144 591 aa8.34□□□□□ -1.07
CUX1-220ENST00000607092 ITGBL1O95965 494 aaPredicted RBP8.34□□□□□ -1.07
CUX1-220ENST00000607092 CRY2Q49AN0 593 aa8.34□□□□□ -1.07
CUX1-220ENST00000607092 KIF6Q6ZMV9 814 aa8.34□□□□□ -1.07
CUX1-220ENST00000607092 CNTROBQ8N137 903 aa8.34□□□□□ -1.07
CUX1-220ENST00000607092 CCDC24Q8N4L8 307 aa8.34□□□□□ -1.07
CUX1-220ENST00000607092 RPGRQ92834 1020 aaKnown RBP8.34□□□□□ -1.07
CUX1-220ENST00000607092 RSPH6AQ9H0K4 717 aa8.34□□□□□ -1.07
CUX1-220ENST00000607092 ZNF277Q9NRM2 450 aaPredicted RBP8.34□□□□□ -1.07
CUX1-220ENST00000607092 WBP1LQ9NX94 342 aa8.34□□□□□ -1.07
CUX1-220ENST00000607092 SIPA1L3O60292 1781 aaPredicted RBP8.34□□□□□ -1.07
CUX1-220ENST00000607092 RIC1Q4ADV7 1423 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms