RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TOPAZ1Q8N9V7 1692 aa15.86■□□□□ 0.13
CLN3-210ENST00000563874 UBE2HP62256 183 aa15.86■□□□□ 0.13
CLN3-210ENST00000563874 PRPF40BQ6NWY9 871 aaKnown RBP15.86■□□□□ 0.13
CLN3-210ENST00000563874 FAM184AQ8NB25 1140 aa15.86■□□□□ 0.13
CLN3-210ENST00000563874 TMEM87AQ8NBN3 555 aa15.86■□□□□ 0.13
CLN3-210ENST00000563874 JAKMIP1Q96N16 626 aaKnown RBP15.86■□□□□ 0.13
CLN3-210ENST00000563874 LGR6Q9HBX8 967 aa15.86■□□□□ 0.13
CLN3-210ENST00000563874 DIAPH3Q9NSV4 1193 aa15.86■□□□□ 0.13
CLN3-210ENST00000563874 DYNC1I1O14576 645 aa15.85■□□□□ 0.13
CLN3-210ENST00000563874 GJB2P29033 226 aa15.85■□□□□ 0.13
CLN3-210ENST00000563874 VPS37CA5D8V6 355 aaPredicted RBP15.85■□□□□ 0.13
CLN3-210ENST00000563874 ABTB2Q8N961 1025 aa15.85■□□□□ 0.13
CLN3-210ENST00000563874 CHMP3Q9Y3E7 222 aa15.85■□□□□ 0.13
CLN3-210ENST00000563874 DNAAF4Q8WXU2 420 aa15.84■□□□□ 0.13
CLN3-210ENST00000563874 HYPKQ9NX55 129 aa15.84■□□□□ 0.13
CLN3-210ENST00000563874 FMN2Q9NZ56 1722 aa15.84■□□□□ 0.13
CLN3-210ENST00000563874 BEND3Q5T5X7 828 aa15.84■□□□□ 0.13
CLN3-210ENST00000563874 NECAB1Q8N987 351 aa15.84■□□□□ 0.13
CLN3-210ENST00000563874 PA2G4Q9UQ80 394 aaKnown RBP15.84■□□□□ 0.13
CLN3-210ENST00000563874 FAM177BA6PVY3 158 aa15.83■□□□□ 0.12
CLN3-210ENST00000563874 NOLC1Q14978 699 aaKnown RBP eCLIP15.83■□□□□ 0.12
CLN3-210ENST00000563874 PDRG1Q9NUG6 133 aa15.83■□□□□ 0.12
CLN3-210ENST00000563874 COL9A3Q14050 684 aaPredicted RBP15.83■□□□□ 0.12
CLN3-210ENST00000563874 UVSSAQ2YD98 709 aa15.83■□□□□ 0.12
CLN3-210ENST00000563874 EPB41L2O43491 1005 aaKnown RBP15.82■□□□□ 0.12
CLN3-210ENST00000563874 PIBF1Q8WXW3 757 aa15.82■□□□□ 0.12
CLN3-210ENST00000563874 MTMR6Q9Y217 621 aa15.82■□□□□ 0.12
CLN3-210ENST00000563874 PLEKHG1Q9ULL1 1385 aa15.82■□□□□ 0.12
CLN3-210ENST00000563874 AP5Z1O43299 807 aa15.81■□□□□ 0.12
CLN3-210ENST00000563874 GLRX3O76003 335 aaKnown RBP15.81■□□□□ 0.12
CLN3-210ENST00000563874 EIF4A1P60842 406 aaKnown RBP15.81■□□□□ 0.12
CLN3-210ENST00000563874 FAM173BQ6P4H8 233 aa15.81■□□□□ 0.12
CLN3-210ENST00000563874 FERMT3Q86UX7 667 aa15.81■□□□□ 0.12
CLN3-210ENST00000563874 MAP7D2Q96T17 732 aa15.81■□□□□ 0.12
CLN3-210ENST00000563874 KDM4AO75164 1064 aa15.81■□□□□ 0.12
CLN3-210ENST00000563874 CLASRPQ8N2M8 674 aaKnown RBP15.81■□□□□ 0.12
CLN3-210ENST00000563874 TCEANC2Q96MN5 208 aa15.81■□□□□ 0.12
CLN3-210ENST00000563874 EID1Q9Y6B2 187 aa15.81■□□□□ 0.12
CLN3-210ENST00000563874 PXDNLA1KZ92 1463 aa15.81■□□□□ 0.12
CLN3-210ENST00000563874 TULP1O00294 542 aaPredicted RBP15.81■□□□□ 0.12
CLN3-210ENST00000563874 SPC24Q8NBT2 197 aa15.81■□□□□ 0.12
CLN3-210ENST00000563874 ATP6V1DQ9Y5K8 247 aa15.81■□□□□ 0.12
CLN3-210ENST00000563874 KCNJ4P48050 445 aa15.8■□□□□ 0.12
CLN3-210ENST00000563874 ST3GAL1Q11201 340 aa15.8■□□□□ 0.12
CLN3-210ENST00000563874 ME3Q16798 604 aa15.8■□□□□ 0.12
CLN3-210ENST00000563874 LETM1O95202 739 aaPredicted RBP15.8■□□□□ 0.12
CLN3-210ENST00000563874 CYP46A1Q9Y6A2 500 aa15.8■□□□□ 0.12
CLN3-210ENST00000563874 UBR1Q8IWV7 1749 aa15.8■□□□□ 0.12
CLN3-210ENST00000563874 LRRC37A3O60309 1634 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 C9orf78Q9NZ63 289 aaPredicted RBP15.79■□□□□ 0.12
CLN3-210ENST00000563874 IFIT2P09913 472 aaKnown RBP15.79■□□□□ 0.12
CLN3-210ENST00000563874 CAMK4Q16566 473 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 CWF19L2Q2TBE0 894 aaKnown RBP15.79■□□□□ 0.12
CLN3-210ENST00000563874 FAM227BQ96M60 508 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 ECHDC1Q9NTX5 307 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 RGPD8O14715 1765 aaPredicted RBP15.79■□□□□ 0.12
CLN3-210ENST00000563874 PIK3C2AO00443 1686 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 HSP90AB4PQ58FF6 505 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 NBPF6Q5VWK0 638 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 MPRIPQ6WCQ1 1025 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 MYRIPQ8NFW9 859 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 RUFY2Q8WXA3 655 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 NBPF4Q96M43 638 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 FUCA2Q9BTY2 467 aa15.79■□□□□ 0.12
CLN3-210ENST00000563874 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.79■□□□□ 0.12
CLN3-210ENST00000563874 NWD1Q149M9 1564 aa15.78■□□□□ 0.12
CLN3-210ENST00000563874 VPS53Q5VIR6 699 aa15.78■□□□□ 0.12
CLN3-210ENST00000563874 AACSQ86V21 672 aa15.78■□□□□ 0.12
CLN3-210ENST00000563874 BABAM1Q9NWV8 329 aa15.78■□□□□ 0.12
CLN3-210ENST00000563874 PROSER3Q2NL68 480 aa15.78■□□□□ 0.12
CLN3-210ENST00000563874 TPCN1Q9ULQ1 816 aa15.78■□□□□ 0.12
CLN3-210ENST00000563874 TTC41PQ6P2S7 1318 aa15.78■□□□□ 0.12
CLN3-210ENST00000563874 ADCY9O60503 1353 aa15.78■□□□□ 0.12
CLN3-210ENST00000563874 TEFQ10587 303 aa15.77■□□□□ 0.12
CLN3-210ENST00000563874 ZSWIM6Q9HCJ5 1215 aa15.77■□□□□ 0.12
CLN3-210ENST00000563874 MAP3K2Q9Y2U5 619 aa15.77■□□□□ 0.12
CLN3-210ENST00000563874 RBM8AQ9Y5S9 174 aaKnown RBP15.77■□□□□ 0.12
CLN3-210ENST00000563874 BTBD11A6QL63 1104 aa15.77■□□□□ 0.11
CLN3-210ENST00000563874 LARP1BQ659C4 914 aaKnown RBP15.76■□□□□ 0.11
CLN3-210ENST00000563874 CDC37L1Q7L3B6 337 aa15.76■□□□□ 0.11
CLN3-210ENST00000563874 RBM33Q96EV2 1170 aaKnown RBP15.76■□□□□ 0.11
CLN3-210ENST00000563874 CCDC8Q9H0W5 538 aaPredicted RBP15.76■□□□□ 0.11
CLN3-210ENST00000563874 PRAMEF22A3QJZ6 481 aa15.76■□□□□ 0.11
CLN3-210ENST00000563874 ZKSCAN1P17029 563 aaPredicted RBP15.76■□□□□ 0.11
CLN3-210ENST00000563874 LRRC59Q96AG4 307 aaKnown RBP15.76■□□□□ 0.11
CLN3-210ENST00000563874 PYCARDQ9ULZ3 195 aa15.76■□□□□ 0.11
CLN3-210ENST00000563874 NECTIN1Q15223 517 aa15.76■□□□□ 0.11
CLN3-210ENST00000563874 CREB3L3Q68CJ9 461 aa15.76■□□□□ 0.11
CLN3-210ENST00000563874 TTC6Q86TZ1 520 aa15.76■□□□□ 0.11
CLN3-210ENST00000563874 KCNF1Q9H3M0 494 aa15.76■□□□□ 0.11
CLN3-210ENST00000563874 PRDM10Q9NQV6 1147 aa15.76■□□□□ 0.11
CLN3-210ENST00000563874 TAF6LQ9Y6J9 622 aa15.76■□□□□ 0.11
CLN3-210ENST00000563874 CCDC171Q6TFL3 1326 aa15.76■□□□□ 0.11
CLN3-210ENST00000563874 SIL1Q9H173 461 aa15.75■□□□□ 0.11
CLN3-210ENST00000563874 SETD1BQ9UPS6 1966 aaKnown RBP15.75■□□□□ 0.11
CLN3-210ENST00000563874 DIP2AQ14689 1571 aa15.75■□□□□ 0.11
CLN3-210ENST00000563874 CEMIPQ8WUJ3 1361 aa15.75■□□□□ 0.11
CLN3-210ENST00000563874 USP42Q9H9J4 1324 aaKnown RBP15.75■□□□□ 0.11
CLN3-210ENST00000563874 LIG1P18858 919 aa15.75■□□□□ 0.11
CLN3-210ENST00000563874 NMIQ13287 307 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms