RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	MDFI	Q99750	246 aa		5.04	□□□□□ -1.6
SPG11-223	ENST00000560858		A6NJY4	79 aa		5.03	□□□□□ -1.6
SPG11-223	ENST00000560858	LILRB5	O75023	590 aa		5.03	□□□□□ -1.6
SPG11-223	ENST00000560858	COBL	O75128	1261 aa		5.03	□□□□□ -1.6
SPG11-223	ENST00000560858	TXK	P42681	527 aa		5.03	□□□□□ -1.6
SPG11-223	ENST00000560858	MBTPS1	Q14703	1052 aa		5.03	□□□□□ -1.6
SPG11-223	ENST00000560858	SLC4A9	Q96Q91	983 aa		5.03	□□□□□ -1.6
SPG11-223	ENST00000560858	SERTAD1	Q9UHV2	236 aa		5.03	□□□□□ -1.6
SPG11-223	ENST00000560858	STARD13	Q9Y3M8	1113 aa		5.03	□□□□□ -1.6
SPG11-223	ENST00000560858	ALB	P02768	609 aa		5.02	□□□□□ -1.61
SPG11-223	ENST00000560858	NID1	P14543	1247 aa		5.02	□□□□□ -1.61
SPG11-223	ENST00000560858	SELP	P16109	830 aa		5.02	□□□□□ -1.61
SPG11-223	ENST00000560858	RAC1	P63000	192 aa		5.02	□□□□□ -1.61
SPG11-223	ENST00000560858	MAP7D1	Q3KQU3	841 aa		5.02	□□□□□ -1.61
SPG11-223	ENST00000560858	MCTP1	Q6DN14	999 aa		5.02	□□□□□ -1.61
SPG11-223	ENST00000560858	C8orf86	Q6ZUL3	223 aa		5.02	□□□□□ -1.61
SPG11-223	ENST00000560858	YBX3	P16989	372 aa	Known RBP eCLIP	5.01	□□□□□ -1.61	1e-6	■□□□□ 10.7
SPG11-223	ENST00000560858	ADH7	P40394	386 aa		5.01	□□□□□ -1.61
SPG11-223	ENST00000560858	MTFR1	Q15390	333 aa		5.01	□□□□□ -1.61
SPG11-223	ENST00000560858	LRRC69	Q6ZNQ3	347 aa		5.01	□□□□□ -1.61
SPG11-223	ENST00000560858	PRM3	Q9NNZ6	103 aa		5.01	□□□□□ -1.61
SPG11-223	ENST00000560858	USP21	Q9UK80	565 aa		5.01	□□□□□ -1.61
SPG11-223	ENST00000560858	RNF112	Q9ULX5	631 aa		5.01	□□□□□ -1.61
SPG11-223	ENST00000560858	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	5.01	□□□□□ -1.61
SPG11-223	ENST00000560858		A0A0A0MRY4	1105 aa		5	□□□□□ -1.61
SPG11-223	ENST00000560858	BACH1	O14867	736 aa		5	□□□□□ -1.61
SPG11-223	ENST00000560858	GPR37L1	O60883	481 aa		5	□□□□□ -1.61
SPG11-223	ENST00000560858	C20orf204	Q6ZNR8	217 aa		5	□□□□□ -1.61
SPG11-223	ENST00000560858	ZNF295-AS1	Q8N0V1	137 aa		5	□□□□□ -1.61
SPG11-223	ENST00000560858	MTMR14	Q8NCE2	650 aa		5	□□□□□ -1.61
SPG11-223	ENST00000560858	CHIC2	Q9UKJ5	165 aa		5	□□□□□ -1.61
SPG11-223	ENST00000560858	PARP3	Q9Y6F1	533 aa		5	□□□□□ -1.61
SPG11-223	ENST00000560858	COL17A1	Q9UMD9	1497 aa	Predicted RBP	5	□□□□□ -1.61
SPG11-223	ENST00000560858	SPEM2	Q0P670	501 aa		4.99	□□□□□ -1.61
SPG11-223	ENST00000560858	SFSWAP	Q12872	951 aa	Known RBP	4.99	□□□□□ -1.61
SPG11-223	ENST00000560858	SLC30A3	Q99726	388 aa		4.99	□□□□□ -1.61
SPG11-223	ENST00000560858	GPC6	Q9Y625	555 aa	Predicted RBP	4.99	□□□□□ -1.61
SPG11-223	ENST00000560858	TMEM229A	B2RXF0	380 aa		4.98	□□□□□ -1.61
SPG11-223	ENST00000560858	TXLNA	P40222	546 aa		4.98	□□□□□ -1.61
SPG11-223	ENST00000560858	SLC51A	Q86UW1	340 aa		4.98	□□□□□ -1.61
SPG11-223	ENST00000560858	L3MBTL2	Q969R5	705 aa		4.98	□□□□□ -1.61
SPG11-223	ENST00000560858	PCMTD2	Q9NV79	361 aa		4.98	□□□□□ -1.61
SPG11-223	ENST00000560858	ZNF232	Q9UNY5	417 aa		4.98	□□□□□ -1.61
SPG11-223	ENST00000560858	NOS2	P35228	1153 aa		4.97	□□□□□ -1.61
SPG11-223	ENST00000560858	SHISA2	Q6UWI4	295 aa		4.97	□□□□□ -1.61
SPG11-223	ENST00000560858	JPH1	Q9HDC5	661 aa	Predicted RBP	4.97	□□□□□ -1.61
SPG11-223	ENST00000560858	ANKIB1	Q9P2G1	1089 aa		4.97	□□□□□ -1.61
SPG11-223	ENST00000560858	EML1	O00423	815 aa		4.96	□□□□□ -1.62
SPG11-223	ENST00000560858	TEAD4	Q15561	434 aa		4.96	□□□□□ -1.62
SPG11-223	ENST00000560858	PLPP7	Q8NBV4	271 aa		4.96	□□□□□ -1.62
SPG11-223	ENST00000560858	IL27	Q8NEV9	243 aa		4.96	□□□□□ -1.62
SPG11-223	ENST00000560858	SSBP4	Q9BWG4	385 aa	Predicted RBP	4.96	□□□□□ -1.62
SPG11-223	ENST00000560858	SNRK	Q9NRH2	765 aa		4.96	□□□□□ -1.62
SPG11-223	ENST00000560858	SCHIP1	Q9P0W5	487 aa	Predicted RBP	4.96	□□□□□ -1.62
SPG11-223	ENST00000560858	USP3	Q9Y6I4	520 aa		4.96	□□□□□ -1.62
SPG11-223	ENST00000560858	RAB44	Q7Z6P3	723 aa	Predicted RBP	4.95	□□□□□ -1.62
SPG11-223	ENST00000560858	CEP63	Q96MT8	703 aa		4.95	□□□□□ -1.62
SPG11-223	ENST00000560858	FMNL2	Q96PY5	1086 aa		4.95	□□□□□ -1.62
SPG11-223	ENST00000560858	UBE2O	Q9C0C9	1292 aa	Known RBP	4.95	□□□□□ -1.62
SPG11-223	ENST00000560858	IGFLR1	Q9H665	355 aa		4.95	□□□□□ -1.62
SPG11-223	ENST00000560858	BRD7	Q9NPI1	651 aa		4.95	□□□□□ -1.62
SPG11-223	ENST00000560858	KCNH4	Q9UQ05	1017 aa		4.95	□□□□□ -1.62
SPG11-223	ENST00000560858	IRAK1	P51617	712 aa		4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	KCNQ4	P56696	695 aa		4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	TBC1D8B	Q0IIM8	1120 aa		4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	SEMA3F	Q13275	785 aa		4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	DMRTC2	Q8IXT2	367 aa	Predicted RBP	4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	FMR1NB	Q8N0W7	255 aa	Predicted RBP	4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	RHPN1	Q8TCX5	695 aa		4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	NUDT8	Q8WV74	236 aa		4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	WFDC12	Q8WWY7	111 aa		4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	BHMT	Q93088	406 aa		4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	EFCC1	Q9HA90	598 aa		4.94	□□□□□ -1.62
SPG11-223	ENST00000560858	SERTM1	A2A2V5	107 aa		4.93	□□□□□ -1.62
SPG11-223	ENST00000560858	SFI1	A8K8P3	1242 aa		4.93	□□□□□ -1.62
SPG11-223	ENST00000560858	RGS9	O75916	674 aa	Predicted RBP	4.93	□□□□□ -1.62
SPG11-223	ENST00000560858	IREB2	P48200	963 aa	Known RBP	4.93	□□□□□ -1.62
SPG11-223	ENST00000560858	AFF1	P51825	1210 aa	Known RBP	4.93	□□□□□ -1.62
SPG11-223	ENST00000560858	DTWD1	Q8N5C7	304 aa		4.93	□□□□□ -1.62
SPG11-223	ENST00000560858	ZDHHC1	Q8WTX9	485 aa		4.93	□□□□□ -1.62
SPG11-223	ENST00000560858	C7orf43	Q8WVR3	580 aa		4.93	□□□□□ -1.62
SPG11-223	ENST00000560858	PCDHGA11	Q9Y5H2	935 aa		4.93	□□□□□ -1.62
SPG11-223	ENST00000560858	PSME1	Q06323	249 aa		4.92	□□□□□ -1.62
SPG11-223	ENST00000560858	EML3	Q32P44	896 aa		4.92	□□□□□ -1.62
SPG11-223	ENST00000560858	C1orf53	Q5VUE5	145 aa		4.92	□□□□□ -1.62
SPG11-223	ENST00000560858	PSAPL1	Q6NUJ1	521 aa		4.92	□□□□□ -1.62
SPG11-223	ENST00000560858	SLC6A14	Q9UN76	642 aa		4.92	□□□□□ -1.62
SPG11-223	ENST00000560858	TBC1D2B	Q9UPU7	963 aa		4.92	□□□□□ -1.62
SPG11-223	ENST00000560858	NOD1	Q9Y239	953 aa		4.92	□□□□□ -1.62
SPG11-223	ENST00000560858	CHMP3	Q9Y3E7	222 aa		4.92	□□□□□ -1.62
SPG11-223	ENST00000560858	LZTS3	O60299	673 aa	Predicted RBP	4.91	□□□□□ -1.62
SPG11-223	ENST00000560858	SSTR4	P31391	388 aa		4.91	□□□□□ -1.62
SPG11-223	ENST00000560858	VAC14	Q08AM6	782 aa		4.91	□□□□□ -1.62
SPG11-223	ENST00000560858	PCSK7	Q16549	785 aa		4.91	□□□□□ -1.62
SPG11-223	ENST00000560858	WASHC4	Q2M389	1173 aa		4.91	□□□□□ -1.62
SPG11-223	ENST00000560858	IGF2-AS	Q6U949	168 aa		4.91	□□□□□ -1.62
SPG11-223	ENST00000560858	PRR23C	Q6ZRP0	262 aa		4.91	□□□□□ -1.62
SPG11-223	ENST00000560858	FBXO11	Q86XK2	927 aa		4.91	□□□□□ -1.62
SPG11-223	ENST00000560858	SLC9A9	Q8IVB4	645 aa		4.91	□□□□□ -1.62
SPG11-223	ENST00000560858	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	4.91	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms