RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 NHSQ6T4R5 1651 aa8.3□□□□□ -1.08
USP3-215ENST00000559771 KCNMA1Q12791 1236 aa8.29□□□□□ -1.08
USP3-215ENST00000559771 NBPF14Q5TI25 921 aa8.29□□□□□ -1.08
USP3-215ENST00000559771 NME9Q86XW9 330 aa8.29□□□□□ -1.08
USP3-215ENST00000559771 RTN4Q9NQC3 1192 aaKnown RBP8.29□□□□□ -1.08
USP3-215ENST00000559771 PAPPAQ13219 1627 aa8.29□□□□□ -1.08
USP3-215ENST00000559771 TNS2Q63HR2 1409 aa8.29□□□□□ -1.08
USP3-215ENST00000559771 DPYSL4O14531 572 aa8.28□□□□□ -1.08
USP3-215ENST00000559771 KCNQ2O43526 872 aa8.28□□□□□ -1.08
USP3-215ENST00000559771 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.28□□□□□ -1.089e-8■■■■□ 26.3
USP3-215ENST00000559771 CDCA7Q9BWT1 371 aaPredicted RBP8.28□□□□□ -1.08
USP3-215ENST00000559771 SLC12A5Q9H2X9 1139 aa8.28□□□□□ -1.08
USP3-215ENST00000559771 MYOM1P52179 1685 aa8.27□□□□□ -1.08
USP3-215ENST00000559771 A0A1W2PP64 1363 aa8.27□□□□□ -1.09
USP3-215ENST00000559771 CCDC7Q96M83 1385 aa8.27□□□□□ -1.09
USP3-215ENST00000559771 KRTAP9-6A0A140TA67 174 aa8.27□□□□□ -1.09
USP3-215ENST00000559771 NBR1Q14596 966 aa8.27□□□□□ -1.09
USP3-215ENST00000559771 SLF2Q8IX21 1173 aa8.27□□□□□ -1.09
USP3-215ENST00000559771 NECTIN2Q92692 538 aa8.27□□□□□ -1.09
USP3-215ENST00000559771 TESK2Q96S53 571 aa8.27□□□□□ -1.09
USP3-215ENST00000559771 SPON1Q9HCB6 807 aa8.27□□□□□ -1.09
USP3-215ENST00000559771 BTAF1O14981 1849 aa8.26□□□□□ -1.09
USP3-215ENST00000559771 SHANK3Q9BYB0 1731 aa8.26□□□□□ -1.09
USP3-215ENST00000559771 CSB-PGBD3P0DP91 1061 aa8.26□□□□□ -1.09
USP3-215ENST00000559771 CAMK2BQ13554 666 aa8.26□□□□□ -1.09
USP3-215ENST00000559771 TXNRD1Q16881 649 aa8.26□□□□□ -1.09
USP3-215ENST00000559771 CARD11Q9BXL7 1154 aa8.26□□□□□ -1.09
USP3-215ENST00000559771 FAM208AQ9UK61 1670 aaKnown RBP8.26□□□□□ -1.09
USP3-215ENST00000559771 EDC4Q6P2E9 1401 aaKnown RBP8.26□□□□□ -1.09
USP3-215ENST00000559771 UTRNP46939 3433 aa8.26□□□□□ -1.09
USP3-215ENST00000559771 RGPD2P0DJD1 1756 aa8.25□□□□□ -1.09
USP3-215ENST00000559771 NINLQ9Y2I6 1382 aa8.25□□□□□ -1.09
USP3-215ENST00000559771 EXOC5O00471 708 aa8.25□□□□□ -1.09
USP3-215ENST00000559771 AMER1Q5JTC6 1135 aaPredicted RBP8.25□□□□□ -1.09
USP3-215ENST00000559771 CYP4X1Q8N118 509 aa8.25□□□□□ -1.09
USP3-215ENST00000559771 ERBB4Q15303 1308 aa8.25□□□□□ -1.09
USP3-215ENST00000559771 ZBTB7AO95365 584 aa8.24□□□□□ -1.09
USP3-215ENST00000559771 TMC1Q8TDI8 760 aa8.24□□□□□ -1.09
USP3-215ENST00000559771 ANKRD24Q8TF21 1146 aa8.24□□□□□ -1.09
USP3-215ENST00000559771 SLC16A10Q8TF71 515 aa8.24□□□□□ -1.09
USP3-215ENST00000559771 PUS7Q96PZ0 661 aaKnown RBP8.24□□□□□ -1.09
USP3-215ENST00000559771 SENP2Q9HC62 589 aa8.24□□□□□ -1.09
USP3-215ENST00000559771 NLRP2Q9NX02 1062 aa8.24□□□□□ -1.09
USP3-215ENST00000559771 NXF1Q9UBU9 619 aaKnown RBP8.24□□□□□ -1.09
USP3-215ENST00000559771 COL24A1Q17RW2 1714 aa8.23□□□□□ -1.09
USP3-215ENST00000559771 ADH1BP00325 375 aa8.23□□□□□ -1.09
USP3-215ENST00000559771 IL2RBP14784 551 aa8.23□□□□□ -1.09
USP3-215ENST00000559771 SMPD1P17405 629 aa8.23□□□□□ -1.09
USP3-215ENST00000559771 FBLN1P23142 703 aa8.23□□□□□ -1.09
USP3-215ENST00000559771 SLC15A2Q16348 729 aa8.23□□□□□ -1.09
USP3-215ENST00000559771 TTC13Q8NBP0 860 aa8.23□□□□□ -1.09
USP3-215ENST00000559771 ACSBG1Q96GR2 724 aa8.23□□□□□ -1.09
USP3-215ENST00000559771 LRRC4BQ9NT99 713 aa8.23□□□□□ -1.09
USP3-215ENST00000559771 TUBGCP6Q96RT7 1819 aa8.22□□□□□ -1.09
USP3-215ENST00000559771 ST20-MTHFSA0A0A6YYL1 179 aa8.22□□□□□ -1.09
USP3-215ENST00000559771 ZNF827Q17R98 1081 aa8.22□□□□□ -1.09
USP3-215ENST00000559771 HDGFL2Q7Z4V5 671 aaPredicted RBP8.22□□□□□ -1.09
USP3-215ENST00000559771 IP6K1Q92551 441 aa8.22□□□□□ -1.09
USP3-215ENST00000559771 QSER1Q2KHR3 1735 aa8.22□□□□□ -1.09
USP3-215ENST00000559771 TONSLQ96HA7 1378 aa8.22□□□□□ -1.09
USP3-215ENST00000559771 LY75O60449 1722 aa8.21□□□□□ -1.09
USP3-215ENST00000559771 DOT1LQ8TEK3 1739 aa8.21□□□□□ -1.09
USP3-215ENST00000559771 IRF7Q92985 503 aa8.21□□□□□ -1.1
USP3-215ENST00000559771 TERF2IPQ9NYB0 399 aa8.21□□□□□ -1.1
USP3-215ENST00000559771 PPP1R1BQ9UD71 204 aaPredicted RBP8.21□□□□□ -1.1
USP3-215ENST00000559771 MAP3K19Q56UN5 1328 aa8.21□□□□□ -1.1
USP3-215ENST00000559771 NSD2O96028 1365 aa8.21□□□□□ -1.1
USP3-215ENST00000559771 MEGF6O75095 1541 aa8.2□□□□□ -1.1
USP3-215ENST00000559771 YY1P25490 414 aa8.2□□□□□ -1.1
USP3-215ENST00000559771 RPIAP49247 311 aa8.2□□□□□ -1.1
USP3-215ENST00000559771 VEGFBP49765 207 aa8.2□□□□□ -1.1
USP3-215ENST00000559771 SLC6A16Q9GZN6 736 aa8.2□□□□□ -1.1
USP3-215ENST00000559771 STK32BQ9NY57 414 aa8.2□□□□□ -1.1
USP3-215ENST00000559771 HOXC9P31274 260 aa8.19□□□□□ -1.1
USP3-215ENST00000559771 LTV1Q96GA3 475 aaPredicted RBP8.19□□□□□ -1.1
USP3-215ENST00000559771 SYT17Q9BSW7 474 aa8.19□□□□□ -1.1
USP3-215ENST00000559771 PRR14Q9BWN1 585 aa8.19□□□□□ -1.1
USP3-215ENST00000559771 FHDC1Q9C0D6 1143 aaPredicted RBP8.19□□□□□ -1.1
USP3-215ENST00000559771 MTFR1LQ9H019 292 aa8.19□□□□□ -1.1
USP3-215ENST00000559771 ANKRD36BQ8N2N9 1353 aa8.19□□□□□ -1.1
USP3-215ENST00000559771 KIF20BQ96Q89 1820 aa8.18□□□□□ -1.1
USP3-215ENST00000559771 H3BM21 787 aa8.18□□□□□ -1.1
USP3-215ENST00000559771 FYB1O15117 783 aa8.18□□□□□ -1.1
USP3-215ENST00000559771 KCNQ4P56696 695 aa8.18□□□□□ -1.1
USP3-215ENST00000559771 DDX54Q8TDD1 881 aaKnown RBP8.18□□□□□ -1.1
USP3-215ENST00000559771 GOLGB1Q14789 3259 aaKnown RBP8.17□□□□□ -1.1
USP3-215ENST00000559771 RRS1Q15050 365 aaKnown RBP8.17□□□□□ -1.1
USP3-215ENST00000559771 NBPF6Q5VWK0 638 aa8.17□□□□□ -1.1
USP3-215ENST00000559771 NPAS3Q8IXF0 933 aa8.17□□□□□ -1.1
USP3-215ENST00000559771 KIFC2Q96AC6 838 aa8.17□□□□□ -1.1
USP3-215ENST00000559771 NBPF4Q96M43 638 aa8.17□□□□□ -1.1
USP3-215ENST00000559771 EYA1Q99502 592 aa8.17□□□□□ -1.1
USP3-215ENST00000559771 RBM27Q9P2N5 1060 aaKnown RBP8.17□□□□□ -1.1
USP3-215ENST00000559771 PNPLA7Q6ZV29 1317 aa8.17□□□□□ -1.1
USP3-215ENST00000559771 MAP3K5Q99683 1374 aa8.17□□□□□ -1.1
USP3-215ENST00000559771 TOGARAM1Q9Y4F4 1720 aa8.17□□□□□ -1.1
USP3-215ENST00000559771 KAT6BQ8WYB5 2073 aa8.17□□□□□ -1.1
USP3-215ENST00000559771 RTL1A6NKG5 1358 aa8.16□□□□□ -1.1
USP3-215ENST00000559771 ACTN4O43707 911 aaKnown RBP8.16□□□□□ -1.1
USP3-215ENST00000559771 COG3Q96JB2 828 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms