RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 KCNQ3O43525 872 aa13.67□□□□□ -0.22
SRP54-213ENST00000556994 KDM4AO75164 1064 aa13.67□□□□□ -0.22
SRP54-213ENST00000556994 JAKMIP1Q96N16 626 aaKnown RBP13.67□□□□□ -0.22
SRP54-213ENST00000556994 CHMP3Q9Y3E7 222 aa13.67□□□□□ -0.22
SRP54-213ENST00000556994 PTPRUQ92729 1446 aa13.66□□□□□ -0.22
SRP54-213ENST00000556994 VPS37CA5D8V6 355 aaPredicted RBP13.66□□□□□ -0.22
SRP54-213ENST00000556994 EPB41L2O43491 1005 aaKnown RBP13.66□□□□□ -0.22
SRP54-213ENST00000556994 NECAB1Q8N987 351 aa13.66□□□□□ -0.22
SRP54-213ENST00000556994 DIAPH3Q9NSV4 1193 aa13.66□□□□□ -0.22
SRP54-213ENST00000556994 BEND3Q5T5X7 828 aa13.65□□□□□ -0.22
SRP54-213ENST00000556994 MYRIPQ8NFW9 859 aa13.65□□□□□ -0.22
SRP54-213ENST00000556994 LGR6Q9HBX8 967 aa13.65□□□□□ -0.22
SRP54-213ENST00000556994 PDRG1Q9NUG6 133 aa13.65□□□□□ -0.22
SRP54-213ENST00000556994 LETM1O95202 739 aaPredicted RBP13.65□□□□□ -0.22
SRP54-213ENST00000556994 COL9A3Q14050 684 aaPredicted RBP13.65□□□□□ -0.22
SRP54-213ENST00000556994 C14orf37Q86TY3 774 aa13.65□□□□□ -0.22
SRP54-213ENST00000556994 SPC24Q8NBT2 197 aa13.65□□□□□ -0.22
SRP54-213ENST00000556994 PA2G4Q9UQ80 394 aaKnown RBP13.65□□□□□ -0.22
SRP54-213ENST00000556994 MTMR6Q9Y217 621 aa13.65□□□□□ -0.22
SRP54-213ENST00000556994 DNAAF4Q8WXU2 420 aa13.64□□□□□ -0.23
SRP54-213ENST00000556994 RGPD8O14715 1765 aaPredicted RBP13.64□□□□□ -0.23
SRP54-213ENST00000556994 ST3GAL1Q11201 340 aa13.64□□□□□ -0.23
SRP54-213ENST00000556994 FAM173BQ6P4H8 233 aa13.64□□□□□ -0.23
SRP54-213ENST00000556994 FUCA2Q9BTY2 467 aa13.64□□□□□ -0.23
SRP54-213ENST00000556994 CEBPAP49715 358 aaPredicted RBP13.63□□□□□ -0.23
SRP54-213ENST00000556994 ME3Q16798 604 aa13.63□□□□□ -0.23
SRP54-213ENST00000556994 FERMT3Q86UX7 667 aa13.63□□□□□ -0.23
SRP54-213ENST00000556994 ATP6V1DQ9Y5K8 247 aa13.63□□□□□ -0.23
SRP54-213ENST00000556994 LRRC37A3O60309 1634 aa13.63□□□□□ -0.23
SRP54-213ENST00000556994 CACNA1FO60840 1977 aa13.63□□□□□ -0.23
SRP54-213ENST00000556994 PXDNLA1KZ92 1463 aa13.63□□□□□ -0.23
SRP54-213ENST00000556994 GLRX3O76003 335 aaKnown RBP13.63□□□□□ -0.23
SRP54-213ENST00000556994 EIF4A1P60842 406 aaKnown RBP13.63□□□□□ -0.23
SRP54-213ENST00000556994 ABTB2Q8N961 1025 aa13.63□□□□□ -0.23
SRP54-213ENST00000556994 PRDM10Q9NQV6 1147 aa13.63□□□□□ -0.23
SRP54-213ENST00000556994 CAMK4Q16566 473 aa13.62□□□□□ -0.23
SRP54-213ENST00000556994 CLASRPQ8N2M8 674 aaKnown RBP13.62□□□□□ -0.23
SRP54-213ENST00000556994 TCEANC2Q96MN5 208 aa13.62□□□□□ -0.23
SRP54-213ENST00000556994 CYP46A1Q9Y6A2 500 aa13.62□□□□□ -0.23
SRP54-213ENST00000556994 VPS53Q5VIR6 699 aa13.62□□□□□ -0.23
SRP54-213ENST00000556994 ZNF710Q8N1W2 664 aa13.62□□□□□ -0.23
SRP54-213ENST00000556994 KCNF1Q9H3M0 494 aa13.62□□□□□ -0.23
SRP54-213ENST00000556994 SETD1BQ9UPS6 1966 aaKnown RBP13.62□□□□□ -0.23
SRP54-213ENST00000556994 UBR1Q8IWV7 1749 aa13.62□□□□□ -0.23
SRP54-213ENST00000556994 PIK3C2AO00443 1686 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 KCNJ4P48050 445 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 MTERF4Q7Z6M4 381 aaKnown RBP13.61□□□□□ -0.23
SRP54-213ENST00000556994 FAM227BQ96M60 508 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 ZSWIM6Q9HCJ5 1215 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 TPCN1Q9ULQ1 816 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 PYCARDQ9ULZ3 195 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.61□□□□□ -0.23
SRP54-213ENST00000556994 PLEKHG1Q9ULL1 1385 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 NWD1Q149M9 1564 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 HSP90AB4PQ58FF6 505 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 LARP1BQ659C4 914 aaKnown RBP13.61□□□□□ -0.23
SRP54-213ENST00000556994 RUFY2Q8WXA3 655 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 PRIMPOLQ96LW4 560 aa13.61□□□□□ -0.23
SRP54-213ENST00000556994 TTC41PQ6P2S7 1318 aa13.6□□□□□ -0.23
SRP54-213ENST00000556994 IFIT2P09913 472 aaKnown RBP13.6□□□□□ -0.23
SRP54-213ENST00000556994 NECTIN1Q15223 517 aa13.6□□□□□ -0.23
SRP54-213ENST00000556994 ECHDC1Q9NTX5 307 aa13.6□□□□□ -0.23
SRP54-213ENST00000556994 BABAM1Q9NWV8 329 aa13.6□□□□□ -0.23
SRP54-213ENST00000556994 C9orf78Q9NZ63 289 aaPredicted RBP13.6□□□□□ -0.23
SRP54-213ENST00000556994 RBM8AQ9Y5S9 174 aaKnown RBP13.6□□□□□ -0.23
SRP54-213ENST00000556994 LIG1P18858 919 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 CWF19L2Q2TBE0 894 aaKnown RBP13.59□□□□□ -0.23
SRP54-213ENST00000556994 CDC37L1Q7L3B6 337 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 TTC6Q86TZ1 520 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 AACSQ86V21 672 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 SPTLC3Q9NUV7 552 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 ADCY9O60503 1353 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 NBPF6Q5VWK0 638 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 CREB3L3Q68CJ9 461 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 MPRIPQ6WCQ1 1025 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 ZSCAN31Q96LW9 406 aaPredicted RBP13.59□□□□□ -0.23
SRP54-213ENST00000556994 NBPF4Q96M43 638 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 CCDC8Q9H0W5 538 aaPredicted RBP13.59□□□□□ -0.23
SRP54-213ENST00000556994 MAP3K2Q9Y2U5 619 aa13.59□□□□□ -0.23
SRP54-213ENST00000556994 USP42Q9H9J4 1324 aaKnown RBP13.59□□□□□ -0.23
SRP54-213ENST00000556994 ZKSCAN1P17029 563 aaPredicted RBP13.58□□□□□ -0.23
SRP54-213ENST00000556994 HMGN5P82970 282 aaKnown RBP13.58□□□□□ -0.23
SRP54-213ENST00000556994 PROSER3Q2NL68 480 aa13.58□□□□□ -0.23
SRP54-213ENST00000556994 CKAP2LQ8IYA6 745 aa13.58□□□□□ -0.23
SRP54-213ENST00000556994 SH2B1Q9NRF2 756 aaPredicted RBP13.58□□□□□ -0.23
SRP54-213ENST00000556994 TFIP11Q9UBB9 837 aaKnown RBP13.58□□□□□ -0.23
SRP54-213ENST00000556994 PRDM4Q9UKN5 801 aa13.58□□□□□ -0.23
SRP54-213ENST00000556994 EID1Q9Y6B2 187 aa13.58□□□□□ -0.23
SRP54-213ENST00000556994 TAF6LQ9Y6J9 622 aa13.58□□□□□ -0.23
SRP54-213ENST00000556994 CCDC171Q6TFL3 1326 aa13.58□□□□□ -0.24
SRP54-213ENST00000556994 N4BP2Q86UW6 1770 aaPredicted RBP13.58□□□□□ -0.24
SRP54-213ENST00000556994 PRAMEF22A3QJZ6 481 aa13.58□□□□□ -0.24
SRP54-213ENST00000556994 BTBD11A6QL63 1104 aa13.58□□□□□ -0.24
SRP54-213ENST00000556994 CCDC192P0DO97 292 aa13.58□□□□□ -0.24
SRP54-213ENST00000556994 NMIQ13287 307 aaPredicted RBP13.58□□□□□ -0.24
SRP54-213ENST00000556994 LUZP1Q86V48 1076 aa13.58□□□□□ -0.24
SRP54-213ENST00000556994 KIAA1524Q8TCG1 905 aa13.58□□□□□ -0.24
SRP54-213ENST00000556994 CCDC94Q9BW85 323 aaPredicted RBP13.58□□□□□ -0.24
SRP54-213ENST00000556994 TEFQ10587 303 aa13.57□□□□□ -0.24
SRP54-213ENST00000556994 STK3Q13188 491 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms