RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 RIC3Q7Z5B4 369 aa17.92■□□□□ 0.46
DDX55-209ENST00000542286 XAGE3Q8WTP9 111 aa17.92■□□□□ 0.46
DDX55-209ENST00000542286 COPS6Q7L5N1 327 aa17.92■□□□□ 0.46
DDX55-209ENST00000542286 CCDC9Q9Y3X0 531 aaKnown RBP17.92■□□□□ 0.46
DDX55-209ENST00000542286 NDUFB9Q9Y6M9 179 aa17.92■□□□□ 0.46
DDX55-209ENST00000542286 MEGF6O75095 1541 aa17.92■□□□□ 0.46
DDX55-209ENST00000542286 KDM6AO15550 1401 aaPredicted RBP17.92■□□□□ 0.46
DDX55-209ENST00000542286 RAB11FIP3O75154 756 aa17.91■□□□□ 0.46
DDX55-209ENST00000542286 AACSQ86V21 672 aa17.91■□□□□ 0.46
DDX55-209ENST00000542286 GDPD2Q9HCC8 539 aa17.91■□□□□ 0.46
DDX55-209ENST00000542286 SLIT3O75094 1523 aa17.91■□□□□ 0.46
DDX55-209ENST00000542286 MYD88Q99836 296 aa17.91■□□□□ 0.46
DDX55-209ENST00000542286 LMBRD1Q9NUN5 540 aa17.91■□□□□ 0.46
DDX55-209ENST00000542286 NPHP3Q7Z494 1330 aa17.91■□□□□ 0.46
DDX55-209ENST00000542286 ATP5J2-PTCD1G3V325 749 aa17.91■□□□□ 0.46
DDX55-209ENST00000542286 CYP27B1O15528 508 aa17.91■□□□□ 0.46
DDX55-209ENST00000542286 PTCD1O75127 700 aaKnown RBP17.91■□□□□ 0.46
DDX55-209ENST00000542286 GRM8O00222 908 aa17.9■□□□□ 0.46
DDX55-209ENST00000542286 PHKG2P15735 406 aa17.9■□□□□ 0.46
DDX55-209ENST00000542286 MCCP23508 829 aa17.9■□□□□ 0.46
DDX55-209ENST00000542286 NUCB2P80303 420 aa17.9■□□□□ 0.46
DDX55-209ENST00000542286 PTH1RQ03431 593 aa17.9■□□□□ 0.46
DDX55-209ENST00000542286 EDC3Q96F86 508 aaKnown RBP17.9■□□□□ 0.46
DDX55-209ENST00000542286 SLC52A2Q9HAB3 445 aa17.9■□□□□ 0.46
DDX55-209ENST00000542286 GOLGA6L22H0YM25 854 aa17.9■□□□□ 0.46
DDX55-209ENST00000542286 SGSM2O43147 1006 aa17.9■□□□□ 0.46
DDX55-209ENST00000542286 SASH1O94885 1247 aa17.9■□□□□ 0.46
DDX55-209ENST00000542286 CHGBP05060 677 aa17.9■□□□□ 0.46
DDX55-209ENST00000542286 GPT2Q8TD30 523 aa17.89■□□□□ 0.45
DDX55-209ENST00000542286 EAF2Q96CJ1 260 aaPredicted RBP17.89■□□□□ 0.45
DDX55-209ENST00000542286 TRPM3Q9HCF6 1732 aaPredicted RBP17.89■□□□□ 0.45
DDX55-209ENST00000542286 TATP17735 454 aaPredicted RBP17.89■□□□□ 0.45
DDX55-209ENST00000542286 CLASRPQ8N2M8 674 aaKnown RBP17.89■□□□□ 0.45
DDX55-209ENST00000542286 DDX21Q9NR30 783 aaKnown RBP eCLIP17.89■□□□□ 0.45
DDX55-209ENST00000542286 HEG1Q9ULI3 1381 aa17.89■□□□□ 0.45
DDX55-209ENST00000542286 KIAA1211Q6ZU35 1233 aa17.88■□□□□ 0.45
DDX55-209ENST00000542286 SNX14Q9Y5W7 946 aa17.88■□□□□ 0.45
DDX55-209ENST00000542286 IFIT2P09913 472 aaKnown RBP17.88■□□□□ 0.45
DDX55-209ENST00000542286 CNTROBQ8N137 903 aa17.88■□□□□ 0.45
DDX55-209ENST00000542286 LSG1Q9H089 658 aaKnown RBP17.88■□□□□ 0.45
DDX55-209ENST00000542286 HYPKQ9NX55 129 aa17.88■□□□□ 0.45
DDX55-209ENST00000542286 N4BP2Q86UW6 1770 aaPredicted RBP17.87■□□□□ 0.45
DDX55-209ENST00000542286 HSPA4P34932 840 aa17.87■□□□□ 0.45
DDX55-209ENST00000542286 FAM227BQ96M60 508 aa17.87■□□□□ 0.45
DDX55-209ENST00000542286 BOLA2Q9H3K6 86 aa17.87■□□□□ 0.45
DDX55-209ENST00000542286 ADCK5Q3MIX3 580 aa17.87■□□□□ 0.45
DDX55-209ENST00000542286 LINS1Q8NG48 757 aa17.87■□□□□ 0.45
DDX55-209ENST00000542286 DIAPH3Q9NSV4 1193 aa17.86■□□□□ 0.45
DDX55-209ENST00000542286 NCAPD2Q15021 1401 aa17.86■□□□□ 0.45
DDX55-209ENST00000542286 LARGE1O95461 756 aa17.85■□□□□ 0.45
DDX55-209ENST00000542286 KLHL40Q2TBA0 621 aa17.85■□□□□ 0.45
DDX55-209ENST00000542286 MST1RQ04912 1400 aa17.85■□□□□ 0.45
DDX55-209ENST00000542286 ALDH1L1O75891 902 aa17.85■□□□□ 0.45
DDX55-209ENST00000542286 SKOR2Q2VWA4 1001 aaPredicted RBP17.85■□□□□ 0.45
DDX55-209ENST00000542286 PRPF40BQ6NWY9 871 aaKnown RBP17.85■□□□□ 0.45
DDX55-209ENST00000542286 TCEANC2Q96MN5 208 aa17.85■□□□□ 0.45
DDX55-209ENST00000542286 CWC22Q9HCG8 908 aaKnown RBP17.85■□□□□ 0.45
DDX55-209ENST00000542286 ECHDC1Q9NTX5 307 aa17.85■□□□□ 0.45
DDX55-209ENST00000542286 RAD50Q92878 1312 aa17.85■□□□□ 0.45
DDX55-209ENST00000542286 NEURL1BA8MQ27 555 aa17.85■□□□□ 0.45
DDX55-209ENST00000542286 CLEC17AQ6ZS10 378 aa17.85■□□□□ 0.45
DDX55-209ENST00000542286 TAF6LQ9Y6J9 622 aa17.85■□□□□ 0.45
DDX55-209ENST00000542286 PHRF1Q9P1Y6 1649 aaKnown RBP17.84■□□□□ 0.45
DDX55-209ENST00000542286 AK2P54819 239 aa17.84■□□□□ 0.45
DDX55-209ENST00000542286 C5P01031 1676 aa17.84■□□□□ 0.45
DDX55-209ENST00000542286 MTX1Q13505 466 aa17.84■□□□□ 0.45
DDX55-209ENST00000542286 ZSCAN23Q3MJ62 389 aa17.84■□□□□ 0.45
DDX55-209ENST00000542286 UBE3BQ7Z3V4 1068 aa17.84■□□□□ 0.45
DDX55-209ENST00000542286 AOX1Q06278 1338 aa17.84■□□□□ 0.45
DDX55-209ENST00000542286 GLRX3O76003 335 aaKnown RBP17.83■□□□□ 0.45
DDX55-209ENST00000542286 CASTP20810 708 aaKnown RBP17.83■□□□□ 0.45
DDX55-209ENST00000542286 G3BP1Q13283 466 aaKnown RBP eCLIP17.83■□□□□ 0.45
DDX55-209ENST00000542286 IFNL2Q8IZJ0 200 aa17.83■□□□□ 0.45
DDX55-209ENST00000542286 TTC5Q8N0Z6 440 aa17.83■□□□□ 0.45
DDX55-209ENST00000542286 DDX58O95786 925 aaKnown RBP17.83■□□□□ 0.44
DDX55-209ENST00000542286 STRCP1A6NGW2 1772 aa17.83■□□□□ 0.44
DDX55-209ENST00000542286 CUL4AQ13619 759 aa17.82■□□□□ 0.44
DDX55-209ENST00000542286 GCKRQ14397 625 aa17.82■□□□□ 0.44
DDX55-209ENST00000542286 RUFY3Q7L099 469 aa17.82■□□□□ 0.44
DDX55-209ENST00000542286 TMEM63CQ9P1W3 806 aa17.82■□□□□ 0.44
DDX55-209ENST00000542286 HSP90AB4PQ58FF6 505 aa17.82■□□□□ 0.44
DDX55-209ENST00000542286 ANAPC15P60006 121 aa17.81■□□□□ 0.44
DDX55-209ENST00000542286 ANKRD13DQ6ZTN6 518 aa17.81■□□□□ 0.44
DDX55-209ENST00000542286 GADD45BO75293 160 aaPredicted RBP17.81■□□□□ 0.44
DDX55-209ENST00000542286 CABP4P57796 275 aa17.81■□□□□ 0.44
DDX55-209ENST00000542286 NMIQ13287 307 aaPredicted RBP17.81■□□□□ 0.44
DDX55-209ENST00000542286 A0A0D9SFI3 127 aa17.8■□□□□ 0.44
DDX55-209ENST00000542286 BRD1O95696 1058 aa17.8■□□□□ 0.44
DDX55-209ENST00000542286 PRIM1P49642 420 aaKnown RBP17.8■□□□□ 0.44
DDX55-209ENST00000542286 SLFNL1Q499Z3 407 aa17.8■□□□□ 0.44
DDX55-209ENST00000542286 JAKMIP1Q96N16 626 aaKnown RBP17.8■□□□□ 0.44
DDX55-209ENST00000542286 SYCE3A1L190 88 aa17.8■□□□□ 0.44
DDX55-209ENST00000542286 CCDC173Q0VFZ6 552 aa17.8■□□□□ 0.44
DDX55-209ENST00000542286 NEXNQ0ZGT2 675 aa17.8■□□□□ 0.44
DDX55-209ENST00000542286 LARP1Q6PKG0 1096 aaKnown RBP17.8■□□□□ 0.44
DDX55-209ENST00000542286 LRP10Q7Z4F1 713 aa17.8■□□□□ 0.44
DDX55-209ENST00000542286 ZSCAN30Q86W11 494 aa17.8■□□□□ 0.44
DDX55-209ENST00000542286 CHMP3Q9Y3E7 222 aa17.8■□□□□ 0.44
DDX55-209ENST00000542286 SIPA1L3O60292 1781 aaPredicted RBP17.8■□□□□ 0.44
DDX55-209ENST00000542286 ZNF330Q9Y3S2 320 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms