RNA–Protein interactions for RNA: ENST00000520493.1

SQLE-204, Transcript of squalene epoxidase, humanhuman

TSL 3

Gene SQLE, Length 737 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-204ENST00000520493 AIDAQ96BJ3 306 aa8.03□□□□□ -1.12
SQLE-204ENST00000520493 DNAAF2Q9NVR5 837 aaKnown RBP8.03□□□□□ -1.12
SQLE-204ENST00000520493 ZNF358Q9NW07 568 aa8.03□□□□□ -1.12
SQLE-204ENST00000520493 MKRN1Q9UHC7 482 aaKnown RBP8.03□□□□□ -1.12
SQLE-204ENST00000520493 PALM3A6NDB9 673 aaPredicted RBP8.02□□□□□ -1.13
SQLE-204ENST00000520493 BNIP3LO60238 219 aa8.02□□□□□ -1.13
SQLE-204ENST00000520493 APBA3O96018 575 aa8.02□□□□□ -1.13
SQLE-204ENST00000520493 TATP17735 454 aaPredicted RBP8.02□□□□□ -1.13
SQLE-204ENST00000520493 MCTP1Q6DN14 999 aa8.02□□□□□ -1.13
SQLE-204ENST00000520493 LARGE2Q8N3Y3 721 aa8.02□□□□□ -1.13
SQLE-204ENST00000520493 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.02□□□□□ -1.13
SQLE-204ENST00000520493 CABP1Q9NZU7 370 aa8.02□□□□□ -1.13
SQLE-204ENST00000520493 TFIP11Q9UBB9 837 aaKnown RBP8.02□□□□□ -1.13
SQLE-204ENST00000520493 CCDC102BQ68D86 513 aa8.01□□□□□ -1.13
SQLE-204ENST00000520493 C14orf37Q86TY3 774 aa8.01□□□□□ -1.13
SQLE-204ENST00000520493 OGFOD1Q8N543 542 aa8.01□□□□□ -1.13
SQLE-204ENST00000520493 YBX3P16989 372 aaKnown RBP eCLIP8□□□□□ -1.131e-11■□□□□ 8.1
SQLE-204ENST00000520493 FIGNL1Q6PIW4 674 aa8□□□□□ -1.13
SQLE-204ENST00000520493 CRISPLD1Q9H336 500 aa8□□□□□ -1.13
SQLE-204ENST00000520493 SCHIP1Q9P0W5 487 aaPredicted RBP8□□□□□ -1.13
SQLE-204ENST00000520493 CHMP3Q9Y3E7 222 aa8□□□□□ -1.13
SQLE-204ENST00000520493 MAFBQ9Y5Q3 323 aaPredicted RBP8□□□□□ -1.13
SQLE-204ENST00000520493 RASA1P20936 1047 aa7.99□□□□□ -1.13
SQLE-204ENST00000520493 CLDN10P78369 228 aa7.99□□□□□ -1.13
SQLE-204ENST00000520493 PRRT3Q5FWE3 981 aa7.99□□□□□ -1.13
SQLE-204ENST00000520493 ARSJQ5FYB0 599 aaPredicted RBP7.99□□□□□ -1.13
SQLE-204ENST00000520493 ZNF594Q96JF6 807 aaPredicted RBP7.99□□□□□ -1.13
SQLE-204ENST00000520493 PPP1R12CQ9BZL4 782 aa7.99□□□□□ -1.13
SQLE-204ENST00000520493 NDFIP2Q9NV92 336 aa7.99□□□□□ -1.13
SQLE-204ENST00000520493 ZDHHC3Q9NYG2 299 aa7.99□□□□□ -1.13
SQLE-204ENST00000520493 IQSEC3Q9UPP2 1182 aaPredicted RBP7.99□□□□□ -1.13
SQLE-204ENST00000520493 GJA3Q9Y6H8 435 aa7.99□□□□□ -1.13
SQLE-204ENST00000520493 PAX4O43316 350 aa7.98□□□□□ -1.13
SQLE-204ENST00000520493 TXKP42681 527 aa7.98□□□□□ -1.13
SQLE-204ENST00000520493 LARP1Q6PKG0 1096 aaKnown RBP7.98□□□□□ -1.13
SQLE-204ENST00000520493 M0R2N6 131 aa7.97□□□□□ -1.13
SQLE-204ENST00000520493 ATP4AP20648 1035 aa7.97□□□□□ -1.13
SQLE-204ENST00000520493 ADH6P28332 368 aa7.97□□□□□ -1.13
SQLE-204ENST00000520493 NLRP8Q86W28 1048 aa7.97□□□□□ -1.13
SQLE-204ENST00000520493 SLC9A9Q8IVB4 645 aa7.97□□□□□ -1.13
SQLE-204ENST00000520493 SIX5Q8N196 739 aa7.97□□□□□ -1.13
SQLE-204ENST00000520493 ZNF232Q9UNY5 417 aa7.97□□□□□ -1.13
SQLE-204ENST00000520493 KIAA1024Q9UPX6 916 aa7.97□□□□□ -1.13
SQLE-204ENST00000520493 SPDYE3A6NKU9 549 aa7.96□□□□□ -1.14
SQLE-204ENST00000520493 ZBTB7BO15156 539 aaPredicted RBP7.96□□□□□ -1.14
SQLE-204ENST00000520493 BICDL1Q6ZP65 573 aa7.96□□□□□ -1.14
SQLE-204ENST00000520493 TNS4Q8IZW8 715 aa7.96□□□□□ -1.14
SQLE-204ENST00000520493 KLF15Q9UIH9 416 aa7.96□□□□□ -1.14
SQLE-204ENST00000520493 ZNF777Q9ULD5 760 aaPredicted RBP7.96□□□□□ -1.14
SQLE-204ENST00000520493 USP3Q9Y6I4 520 aa7.96□□□□□ -1.14
SQLE-204ENST00000520493 SERTM1A2A2V5 107 aa7.95□□□□□ -1.14
SQLE-204ENST00000520493 FAM229AH3BQW9 127 aa7.95□□□□□ -1.14
SQLE-204ENST00000520493 LMOD1P29536 600 aaPredicted RBP7.95□□□□□ -1.14
SQLE-204ENST00000520493 EPHA4P54764 986 aa7.95□□□□□ -1.14
SQLE-204ENST00000520493 TEAD4Q15561 434 aa7.95□□□□□ -1.14
SQLE-204ENST00000520493 FCHSD1Q86WN1 690 aa7.95□□□□□ -1.14
SQLE-204ENST00000520493 L3MBTL2Q969R5 705 aa7.95□□□□□ -1.14
SQLE-204ENST00000520493 PCDHGC4Q9Y5F7 938 aa7.95□□□□□ -1.14
SQLE-204ENST00000520493 PARP3Q9Y6F1 533 aa7.95□□□□□ -1.14
SQLE-204ENST00000520493 A0A1W2PNR3 127 aa7.94□□□□□ -1.14
SQLE-204ENST00000520493 NOS2P35228 1153 aa7.94□□□□□ -1.14
SQLE-204ENST00000520493 SEC13P55735 322 aa7.94□□□□□ -1.14
SQLE-204ENST00000520493 PSMA6P60900 246 aaKnown RBP7.94□□□□□ -1.14
SQLE-204ENST00000520493 ZNF295-AS1Q8N0V1 137 aa7.94□□□□□ -1.14
SQLE-204ENST00000520493 ARXQ96QS3 562 aa7.94□□□□□ -1.14
SQLE-204ENST00000520493 VRTNQ9H8Y1 702 aa7.94□□□□□ -1.14
SQLE-204ENST00000520493 NEUROD4Q9HD90 331 aa7.94□□□□□ -1.14
SQLE-204ENST00000520493 ATXN7O15265 892 aaPredicted RBP7.93□□□□□ -1.14
SQLE-204ENST00000520493 TBCELQ5QJ74 424 aa7.93□□□□□ -1.14
SQLE-204ENST00000520493 ZCCHC2Q9C0B9 1178 aaKnown RBP7.93□□□□□ -1.14
SQLE-204ENST00000520493 GPC6Q9Y625 555 aaPredicted RBP7.93□□□□□ -1.14
SQLE-204ENST00000520493 SFI1A8K8P3 1242 aa7.92□□□□□ -1.14
SQLE-204ENST00000520493 TSEN2Q8NCE0 465 aaKnown RBP7.92□□□□□ -1.14
SQLE-204ENST00000520493 TSPAN10Q9H1Z9 355 aaPredicted RBP7.92□□□□□ -1.14
SQLE-204ENST00000520493 FAM196BA6NMK8 535 aa7.91□□□□□ -1.14
SQLE-204ENST00000520493 PPP1R12BO60237 982 aaPredicted RBP7.91□□□□□ -1.14
SQLE-204ENST00000520493 H2AFB1P0C5Y9 115 aa7.91□□□□□ -1.14
SQLE-204ENST00000520493 H2AFB2P0C5Z0 115 aa7.91□□□□□ -1.14
SQLE-204ENST00000520493 TXLNAP40222 546 aa7.91□□□□□ -1.14
SQLE-204ENST00000520493 PCBP4P57723 403 aaKnown RBP7.91□□□□□ -1.14
SQLE-204ENST00000520493 ZDHHC1Q8WTX9 485 aa7.91□□□□□ -1.14
SQLE-204ENST00000520493 NACC1Q96RE7 527 aa7.91□□□□□ -1.14
SQLE-204ENST00000520493 ZIC5Q96T25 663 aa7.91□□□□□ -1.14
SQLE-204ENST00000520493 USP17L15C9J2P7 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L10C9JJH3 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L13C9JLJ4 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L12C9JPN9 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L11C9JVI0 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L21D6R901 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L18D6R9N7 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L22D6RA61 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L17D6RBQ6 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L19D6RCP7 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L20D6RJB6 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 KHNYNO15037 678 aaKnown RBP7.9□□□□□ -1.14
SQLE-204ENST00000520493 USP17L24Q0WX57 530 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 GRIK4Q16099 956 aa7.9□□□□□ -1.14
SQLE-204ENST00000520493 CRTC2Q53ET0 693 aaPredicted RBP7.9□□□□□ -1.14
SQLE-204ENST00000520493 KANK4Q5T7N3 995 aaPredicted RBP7.9□□□□□ -1.14
SQLE-204ENST00000520493 GAS2L2Q8NHY3 880 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms