RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 AACSQ86V21 672 aa13.09□□□□□ -0.31
VPS52-217ENST00000478934 CNTROBQ8N137 903 aa13.09□□□□□ -0.31
VPS52-217ENST00000478934 AOX1Q06278 1338 aa13.09□□□□□ -0.31
VPS52-217ENST00000478934 GADD45BO75293 160 aaPredicted RBP13.09□□□□□ -0.31
VPS52-217ENST00000478934 SASH1O94885 1247 aa13.09□□□□□ -0.31
VPS52-217ENST00000478934 ADCK5Q3MIX3 580 aa13.09□□□□□ -0.31
VPS52-217ENST00000478934 EPHA10Q5JZY3 1008 aa13.09□□□□□ -0.31
VPS52-217ENST00000478934 KDM3BQ7LBC6 1761 aa13.08□□□□□ -0.31
VPS52-217ENST00000478934 RAD50Q92878 1312 aa13.08□□□□□ -0.32
VPS52-217ENST00000478934 NPHP4O75161 1426 aaPredicted RBP13.08□□□□□ -0.32
VPS52-217ENST00000478934 LARGE1O95461 756 aa13.08□□□□□ -0.32
VPS52-217ENST00000478934 AK2P54819 239 aa13.08□□□□□ -0.32
VPS52-217ENST00000478934 CLASRPQ8N2M8 674 aaKnown RBP13.08□□□□□ -0.32
VPS52-217ENST00000478934 EAF2Q96CJ1 260 aaPredicted RBP13.08□□□□□ -0.32
VPS52-217ENST00000478934 CACNA1FO60840 1977 aa13.08□□□□□ -0.32
VPS52-217ENST00000478934 RUFY3Q7L099 469 aa13.08□□□□□ -0.32
VPS52-217ENST00000478934 FAM227BQ96M60 508 aa13.08□□□□□ -0.32
VPS52-217ENST00000478934 ERBB3P21860 1342 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 GRM8O00222 908 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 RIC3Q7Z5B4 369 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 USP16Q9Y5T5 823 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 NDUFB9Q9Y6M9 179 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 HEG1Q9ULI3 1381 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 CHGBP05060 677 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 IFIT2P09913 472 aaKnown RBP13.07□□□□□ -0.32
VPS52-217ENST00000478934 ZNF445P59923 1031 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 CCDC173Q0VFZ6 552 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 PRPF40BQ6NWY9 871 aaKnown RBP13.07□□□□□ -0.32
VPS52-217ENST00000478934 ZNF790Q6PG37 636 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 XAGE3Q8WTP9 111 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 EDC3Q96F86 508 aaKnown RBP13.07□□□□□ -0.32
VPS52-217ENST00000478934 ZNF496Q96IT1 587 aaPredicted RBP13.07□□□□□ -0.32
VPS52-217ENST00000478934 DIAPH3Q9NSV4 1193 aa13.07□□□□□ -0.32
VPS52-217ENST00000478934 CASTP20810 708 aaKnown RBP13.06□□□□□ -0.32
VPS52-217ENST00000478934 MCM2P49736 904 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 MTX1Q13505 466 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 COPS6Q7L5N1 327 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 MPNDQ8N594 471 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 ANP32BQ92688 251 aaKnown RBP13.06□□□□□ -0.32
VPS52-217ENST00000478934 ECHDC1Q9NTX5 307 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 ALDH1L1O75891 902 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 GLRX3O76003 335 aaKnown RBP13.06□□□□□ -0.32
VPS52-217ENST00000478934 KIAA1211Q6ZU35 1233 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 TTC14Q96N46 770 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 MYD88Q99836 296 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 BOLA2Q9H3K6 86 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 HYPKQ9NX55 129 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 TAF6LQ9Y6J9 622 aa13.06□□□□□ -0.32
VPS52-217ENST00000478934 LMO7Q8WWI1 1683 aa13.05□□□□□ -0.32
VPS52-217ENST00000478934 LINS1Q8NG48 757 aa13.05□□□□□ -0.32
VPS52-217ENST00000478934 RAPGEF4Q8WZA2 1011 aa13.05□□□□□ -0.32
VPS52-217ENST00000478934 DDX21Q9NR30 783 aaKnown RBP eCLIP13.05□□□□□ -0.32
VPS52-217ENST00000478934 CSB-PGBD3P0DP91 1061 aa13.05□□□□□ -0.32
VPS52-217ENST00000478934 TCEANC2Q96MN5 208 aa13.05□□□□□ -0.32
VPS52-217ENST00000478934 PPP1R9BQ96SB3 815 aa13.05□□□□□ -0.32
VPS52-217ENST00000478934 CCDC9Q9Y3X0 531 aaKnown RBP13.05□□□□□ -0.32
VPS52-217ENST00000478934 N4BP2Q86UW6 1770 aaPredicted RBP13.04□□□□□ -0.32
VPS52-217ENST00000478934 ATP5J2-PTCD1G3V325 749 aa13.04□□□□□ -0.32
VPS52-217ENST00000478934 PTCD1O75127 700 aaKnown RBP13.04□□□□□ -0.32
VPS52-217ENST00000478934 HSP90AB4PQ58FF6 505 aa13.04□□□□□ -0.32
VPS52-217ENST00000478934 INTS4Q96HW7 963 aaKnown RBP13.04□□□□□ -0.32
VPS52-217ENST00000478934 JAKMIP1Q96N16 626 aaKnown RBP13.04□□□□□ -0.32
VPS52-217ENST00000478934 SLC52A2Q9HAB3 445 aa13.04□□□□□ -0.32
VPS52-217ENST00000478934 RPAP1Q9BWH6 1393 aaPredicted RBP13.04□□□□□ -0.32
VPS52-217ENST00000478934 RGPD5Q99666 1765 aa13.04□□□□□ -0.32
VPS52-217ENST00000478934 KDM6AO15550 1401 aaPredicted RBP13.04□□□□□ -0.32
VPS52-217ENST00000478934 USP48Q86UV5 1035 aa13.04□□□□□ -0.32
VPS52-217ENST00000478934 C1orf167Q5SNV9 1468 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 PHKG2P15735 406 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 G3BP1Q13283 466 aaKnown RBP eCLIP13.03□□□□□ -0.32
VPS52-217ENST00000478934 NMIQ13287 307 aaPredicted RBP13.03□□□□□ -0.32
VPS52-217ENST00000478934 IL17RAQ96F46 866 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 TTC41PQ6P2S7 1318 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 NPHP3Q7Z494 1330 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 USP42Q9H9J4 1324 aaKnown RBP13.03□□□□□ -0.32
VPS52-217ENST00000478934 SLIT3O75094 1523 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 NEURL1BA8MQ27 555 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 CYP27B1O15528 508 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 CCDC83Q8IWF9 413 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 NECAB1Q8N987 351 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 C19orf44Q9H6X5 657 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 CNPY2Q9Y2B0 182 aa13.03□□□□□ -0.32
VPS52-217ENST00000478934 NCAPD2Q15021 1401 aa13.02□□□□□ -0.33
VPS52-217ENST00000478934 A0A0D9SFI3 127 aa13.02□□□□□ -0.33
VPS52-217ENST00000478934 MEGF6O75095 1541 aa13.02□□□□□ -0.33
VPS52-217ENST00000478934 DDX58O95786 925 aaKnown RBP13.01□□□□□ -0.33
VPS52-217ENST00000478934 SYT1P21579 422 aa13.01□□□□□ -0.33
VPS52-217ENST00000478934 ST3GAL1Q11201 340 aa13.01□□□□□ -0.33
VPS52-217ENST00000478934 GCKRQ14397 625 aa13.01□□□□□ -0.33
VPS52-217ENST00000478934 LIMCH1Q9UPQ0 1083 aa13.01□□□□□ -0.33
VPS52-217ENST00000478934 TATP17735 454 aaPredicted RBP13.01□□□□□ -0.33
VPS52-217ENST00000478934 MSNP26038 577 aaKnown RBP13.01□□□□□ -0.33
VPS52-217ENST00000478934 LRSAM1Q6UWE0 723 aa13.01□□□□□ -0.33
VPS52-217ENST00000478934 ZSCAN30Q86W11 494 aa13.01□□□□□ -0.33
VPS52-217ENST00000478934 RBM8AQ9Y5S9 174 aaKnown RBP13.01□□□□□ -0.33
VPS52-217ENST00000478934 ZNF589Q86UQ0 364 aaPredicted RBP13□□□□□ -0.33
VPS52-217ENST00000478934 PDRG1Q9NUG6 133 aa13□□□□□ -0.33
VPS52-217ENST00000478934 KCNJ4P48050 445 aa13□□□□□ -0.33
VPS52-217ENST00000478934 ANKRD13DQ6ZTN6 518 aa13□□□□□ -0.33
VPS52-217ENST00000478934 UBE3BQ7Z3V4 1068 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms