RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 MYD88Q99836 296 aa12.68□□□□□ -0.38
CHD3-208ENST00000470531 KAT6BQ8WYB5 2073 aa12.68□□□□□ -0.38
CHD3-208ENST00000470531 MAP3K4Q9Y6R4 1608 aa12.68□□□□□ -0.38
CHD3-208ENST00000470531 DYNC1I1O14576 645 aa12.67□□□□□ -0.38
CHD3-208ENST00000470531 CYP2E1P05181 493 aaPredicted RBP12.67□□□□□ -0.38
CHD3-208ENST00000470531 LRMPQ12912 555 aa12.67□□□□□ -0.38
CHD3-208ENST00000470531 CHL1O00533 1208 aa12.67□□□□□ -0.38
CHD3-208ENST00000470531 ATP8B2P98198 1209 aa12.67□□□□□ -0.38
CHD3-208ENST00000470531 ADCK5Q3MIX3 580 aa12.67□□□□□ -0.38
CHD3-208ENST00000470531 ANO6Q4KMQ2 910 aa12.67□□□□□ -0.38
CHD3-208ENST00000470531 MAP7D2Q96T17 732 aa12.67□□□□□ -0.38
CHD3-208ENST00000470531 RBM8AQ9Y5S9 174 aaKnown RBP12.67□□□□□ -0.38
CHD3-208ENST00000470531 RRP12Q5JTH9 1297 aaKnown RBP12.67□□□□□ -0.38
CHD3-208ENST00000470531 PIBF1Q8WXW3 757 aa12.67□□□□□ -0.38
CHD3-208ENST00000470531 NRDCO43847 1150 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 PTH1RQ03431 593 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 ABCC4O15439 1325 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 PRAMEF22A3QJZ6 481 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 KINO60870 393 aaKnown RBP12.66□□□□□ -0.38
CHD3-208ENST00000470531 BRPF1P55201 1214 aaPredicted RBP12.66□□□□□ -0.38
CHD3-208ENST00000470531 PTPN21Q16825 1174 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 RAPGEF4Q8WZA2 1011 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 BRF1Q92994 677 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 CGNQ9P2M7 1197 aaKnown RBP12.66□□□□□ -0.38
CHD3-208ENST00000470531 PTPRCP08575 1304 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 RTL1A6NKG5 1358 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 NSD2O96028 1365 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 RIMS2Q9UQ26 1411 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 GLRX3O76003 335 aaKnown RBP12.66□□□□□ -0.38
CHD3-208ENST00000470531 LARGE1O95461 756 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 UBE3BQ7Z3V4 1068 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 IL25Q9H293 177 aa12.66□□□□□ -0.38
CHD3-208ENST00000470531 CFAP74Q9C0B2 1584 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 YTHDC2Q9H6S0 1430 aaKnown RBP12.65□□□□□ -0.38
CHD3-208ENST00000470531 TNNT3P45378 269 aaPredicted RBP12.65□□□□□ -0.38
CHD3-208ENST00000470531 ZNF165P49910 485 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 HSP90AB4PQ58FF6 505 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 IBTKQ9P2D0 1353 aaPredicted RBP12.65□□□□□ -0.38
CHD3-208ENST00000470531 DDX58O95786 925 aaKnown RBP12.65□□□□□ -0.38
CHD3-208ENST00000470531 OTUD7BQ6GQQ9 843 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 SNX14Q9Y5W7 946 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 SOS1Q07889 1333 aaPredicted RBP12.65□□□□□ -0.38
CHD3-208ENST00000470531 HTATSF1O43719 755 aaKnown RBP12.65□□□□□ -0.38
CHD3-208ENST00000470531 F13A1P00488 732 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 TNNT1P13805 278 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 U2AF2P26368 475 aaKnown RBP eCLIP12.65□□□□□ -0.38
CHD3-208ENST00000470531 HS1BP3Q53T59 392 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 CLEC17AQ6ZS10 378 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 CCDC112Q8NEF3 446 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 USP44Q9H0E7 712 aa12.65□□□□□ -0.38
CHD3-208ENST00000470531 NMIQ13287 307 aaPredicted RBP12.64□□□□□ -0.39
CHD3-208ENST00000470531 ECHDC1Q9NTX5 307 aa12.64□□□□□ -0.39
CHD3-208ENST00000470531 CLIP2Q9UDT6 1046 aa12.64□□□□□ -0.39
CHD3-208ENST00000470531 JAK2O60674 1132 aa12.64□□□□□ -0.39
CHD3-208ENST00000470531 IRX3P78415 501 aaPredicted RBP12.64□□□□□ -0.39
CHD3-208ENST00000470531 SLFNL1Q499Z3 407 aa12.64□□□□□ -0.39
CHD3-208ENST00000470531 NFXL1Q6ZNB6 911 aa12.64□□□□□ -0.39
CHD3-208ENST00000470531 CERS3Q8IU89 383 aa12.64□□□□□ -0.39
CHD3-208ENST00000470531 PSMA5P28066 241 aa12.64□□□□□ -0.39
CHD3-208ENST00000470531 UBE2HP62256 183 aa12.64□□□□□ -0.39
CHD3-208ENST00000470531 CHRNA2Q15822 529 aa12.64□□□□□ -0.39
CHD3-208ENST00000470531 GOLIM4O00461 696 aa12.63□□□□□ -0.39
CHD3-208ENST00000470531 NCOA5Q9HCD5 579 aaKnown RBP12.63□□□□□ -0.39
CHD3-208ENST00000470531 CHGBP05060 677 aa12.63□□□□□ -0.39
CHD3-208ENST00000470531 STK38Q15208 465 aa12.63□□□□□ -0.39
CHD3-208ENST00000470531 CDC37L1Q7L3B6 337 aa12.63□□□□□ -0.39
CHD3-208ENST00000470531 NRBP1Q9UHY1 535 aa12.63□□□□□ -0.39
CHD3-208ENST00000470531 LIG1P18858 919 aa12.63□□□□□ -0.39
CHD3-208ENST00000470531 RXRAP19793 462 aa12.63□□□□□ -0.39
CHD3-208ENST00000470531 LARP1Q6PKG0 1096 aaKnown RBP12.63□□□□□ -0.39
CHD3-208ENST00000470531 SEC62Q99442 399 aaKnown RBP12.63□□□□□ -0.39
CHD3-208ENST00000470531 ZSWIM4Q9H7M6 989 aa12.63□□□□□ -0.39
CHD3-208ENST00000470531 SBNO2Q9Y2G9 1366 aa12.63□□□□□ -0.39
CHD3-208ENST00000470531 BRD1O95696 1058 aa12.62□□□□□ -0.39
CHD3-208ENST00000470531 SYNE3Q6ZMZ3 975 aa12.62□□□□□ -0.39
CHD3-208ENST00000470531 CABLES1Q8TDN4 633 aa12.62□□□□□ -0.39
CHD3-208ENST00000470531 CCDC94Q9BW85 323 aaPredicted RBP12.62□□□□□ -0.39
CHD3-208ENST00000470531 ZBTB3Q9H5J0 574 aa12.62□□□□□ -0.39
CHD3-208ENST00000470531 QRICH2Q9H0J4 1663 aa12.62□□□□□ -0.39
CHD3-208ENST00000470531 ABCC1P33527 1531 aa12.62□□□□□ -0.39
CHD3-208ENST00000470531 HMGN5P82970 282 aaKnown RBP12.62□□□□□ -0.39
CHD3-208ENST00000470531 NAA30Q147X3 362 aaPredicted RBP12.62□□□□□ -0.39
CHD3-208ENST00000470531 IL17REQ8NFR9 667 aa12.62□□□□□ -0.39
CHD3-208ENST00000470531 TERF1P54274 439 aa12.62□□□□□ -0.39
CHD3-208ENST00000470531 ATP2B3Q16720 1220 aa12.62□□□□□ -0.39
CHD3-208ENST00000470531 ZNF710Q8N1W2 664 aa12.62□□□□□ -0.39
CHD3-208ENST00000470531 SECISBP2LQ93073 1101 aaKnown RBP12.62□□□□□ -0.39
CHD3-208ENST00000470531 FTOQ9C0B1 505 aaKnown RBP eCLIP12.62□□□□□ -0.39
CHD3-208ENST00000470531 HOMEZQ8IX15 550 aa12.61□□□□□ -0.39
CHD3-208ENST00000470531 STRN4Q9NRL3 753 aa12.61□□□□□ -0.39
CHD3-208ENST00000470531 RUFY3Q7L099 469 aa12.61□□□□□ -0.39
CHD3-208ENST00000470531 PYCARDQ9ULZ3 195 aa12.61□□□□□ -0.39
CHD3-208ENST00000470531 PDCP20941 246 aa12.61□□□□□ -0.39
CHD3-208ENST00000470531 PLEKHO1Q53GL0 409 aaPredicted RBP12.61□□□□□ -0.39
CHD3-208ENST00000470531 SMAP1Q8IYB5 467 aaPredicted RBP12.61□□□□□ -0.39
CHD3-208ENST00000470531 USP16Q9Y5T5 823 aa12.61□□□□□ -0.39
CHD3-208ENST00000470531 MROH2AA6NES4 1674 aa12.61□□□□□ -0.39
CHD3-208ENST00000470531 ATP7AQ04656 1500 aa12.6□□□□□ -0.39
CHD3-208ENST00000470531 RIOK3O14730 519 aaKnown RBP12.6□□□□□ -0.39
CHD3-208ENST00000470531 PROSER3Q2NL68 480 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms