RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 GNAI1P63096 354 aa24.3■■□□□ 1.48
USP39-209ENST00000458268 HLFQ16534 295 aa24.29■■□□□ 1.48
USP39-209ENST00000458268 NUP98P52948 1817 aa24.28■■□□□ 1.48
USP39-209ENST00000458268 ELL2O00472 640 aaPredicted RBP24.28■■□□□ 1.48
USP39-209ENST00000458268 AIMP1Q12904 312 aaKnown RBP24.28■■□□□ 1.48
USP39-209ENST00000458268 PROSER3Q2NL68 480 aa24.28■■□□□ 1.48
USP39-209ENST00000458268 IFT57Q9NWB7 429 aa24.28■■□□□ 1.48
USP39-209ENST00000458268 NIP7Q9Y221 180 aaKnown RBP eCLIP24.28■■□□□ 1.48
USP39-209ENST00000458268 HDGFL1Q5TGJ6 251 aa24.27■■□□□ 1.48
USP39-209ENST00000458268 NBPF5PQ86XG9 351 aaPredicted RBP24.27■■□□□ 1.48
USP39-209ENST00000458268 CNBD1Q8NA66 436 aa24.27■■□□□ 1.48
USP39-209ENST00000458268 BRCA1P38398 1863 aaKnown RBP24.27■■□□□ 1.48
USP39-209ENST00000458268 DUSP27Q5VZP5 1158 aa24.26■■□□□ 1.47
USP39-209ENST00000458268 PRR5LQ6MZQ0 368 aa24.26■■□□□ 1.47
USP39-209ENST00000458268 ERBB4Q15303 1308 aa24.26■■□□□ 1.47
USP39-209ENST00000458268 ANKRD31Q8N7Z5 1873 aa24.26■■□□□ 1.47
USP39-209ENST00000458268 ST5P78524 1137 aa24.25■■□□□ 1.47
USP39-209ENST00000458268 C2CD5Q86YS7 1000 aa24.25■■□□□ 1.47
USP39-209ENST00000458268 PIM2Q9P1W9 311 aa24.25■■□□□ 1.47
USP39-209ENST00000458268 MAP3K15Q6ZN16 1313 aa24.25■■□□□ 1.47
USP39-209ENST00000458268 GPTP24298 496 aa24.24■■□□□ 1.47
USP39-209ENST00000458268 CLEC4GQ6UXB4 293 aa24.24■■□□□ 1.47
USP39-209ENST00000458268 TSR2Q969E8 191 aaKnown RBP24.24■■□□□ 1.47
USP39-209ENST00000458268 CHPF2Q9P2E5 772 aa24.24■■□□□ 1.47
USP39-209ENST00000458268 ZNF853P0CG23 659 aa24.23■■□□□ 1.47
USP39-209ENST00000458268 GTF2E1P29083 439 aaPredicted RBP24.23■■□□□ 1.47
USP39-209ENST00000458268 WWC1Q8IX03 1113 aa24.23■■□□□ 1.47
USP39-209ENST00000458268 CACNA1SQ13698 1873 aa24.23■■□□□ 1.47
USP39-209ENST00000458268 KCNA3P22001 575 aa24.22■■□□□ 1.47
USP39-209ENST00000458268 PDIA6Q15084 440 aa24.22■■□□□ 1.47
USP39-209ENST00000458268 DALRD3Q5D0E6 543 aaKnown RBP24.22■■□□□ 1.47
USP39-209ENST00000458268 XAGE3Q8WTP9 111 aa24.22■■□□□ 1.47
USP39-209ENST00000458268 H0YIN7 160 aa24.21■■□□□ 1.47
USP39-209ENST00000458268 ARHGAP27Q6ZUM4 889 aa24.21■■□□□ 1.47
USP39-209ENST00000458268 ZNF622Q969S3 477 aaKnown RBP eCLIP24.21■■□□□ 1.47
USP39-209ENST00000458268 COL11A2P13942 1736 aaPredicted RBP24.21■■□□□ 1.47
USP39-209ENST00000458268 ARFGEF1Q9Y6D6 1849 aa24.2■■□□□ 1.46
USP39-209ENST00000458268 COPS6Q7L5N1 327 aa24.2■■□□□ 1.46
USP39-209ENST00000458268 DLEC1Q9Y238 1755 aa24.2■■□□□ 1.46
USP39-209ENST00000458268 ERVV-1B6SEH8 477 aa24.19■■□□□ 1.46
USP39-209ENST00000458268 PDE6BP35913 854 aa24.19■■□□□ 1.46
USP39-209ENST00000458268 CCDC27Q2M243 656 aa24.19■■□□□ 1.46
USP39-209ENST00000458268 DDX21Q9NR30 783 aaKnown RBP eCLIP24.19■■□□□ 1.46
USP39-209ENST00000458268 ZNF219Q9P2Y4 722 aaPredicted RBP24.19■■□□□ 1.46
USP39-209ENST00000458268 HOXB7P09629 217 aa24.18■■□□□ 1.46
USP39-209ENST00000458268 C8orf58Q8NAV2 365 aa24.18■■□□□ 1.46
USP39-209ENST00000458268 ZNF428Q96B54 188 aa24.18■■□□□ 1.46
USP39-209ENST00000458268 GOLGB1Q14789 3259 aaKnown RBP24.18■■□□□ 1.46
USP39-209ENST00000458268 TPTE2Q6XPS3 522 aa24.17■■□□□ 1.46
USP39-209ENST00000458268 BRIP1Q9BX63 1249 aa24.17■■□□□ 1.46
USP39-209ENST00000458268 LRP10Q7Z4F1 713 aa24.16■■□□□ 1.46
USP39-209ENST00000458268 NUTM1Q86Y26 1132 aa24.16■■□□□ 1.46
USP39-209ENST00000458268 DBF4Q9UBU7 674 aaPredicted RBP24.16■■□□□ 1.46
USP39-209ENST00000458268 ANKRD36CQ5JPF3 1778 aa24.16■■□□□ 1.46
USP39-209ENST00000458268 UTRNP46939 3433 aa24.15■■□□□ 1.46
USP39-209ENST00000458268 TCERG1O14776 1098 aaKnown RBP24.15■■□□□ 1.46
USP39-209ENST00000458268 GIGYF2Q6Y7W6 1299 aaKnown RBP24.15■■□□□ 1.46
USP39-209ENST00000458268 TSPYL6Q8N831 410 aa24.14■■□□□ 1.45
USP39-209ENST00000458268 TTLL6Q8N841 843 aa24.14■■□□□ 1.45
USP39-209ENST00000458268 ATP10DQ9P241 1426 aa24.14■■□□□ 1.45
USP39-209ENST00000458268 UBN2Q6ZU65 1347 aa24.13■■□□□ 1.45
USP39-209ENST00000458268 RGL2O15211 777 aa24.13■■□□□ 1.45
USP39-209ENST00000458268 NYXQ9GZU5 481 aa24.13■■□□□ 1.45
USP39-209ENST00000458268 TNRC6CQ9HCJ0 1690 aaKnown RBP24.12■■□□□ 1.45
USP39-209ENST00000458268 SUSD4Q5VX71 490 aa24.12■■□□□ 1.45
USP39-209ENST00000458268 ZNF784Q8NCA9 323 aaPredicted RBP24.12■■□□□ 1.45
USP39-209ENST00000458268 HYPKQ9NX55 129 aa24.12■■□□□ 1.45
USP39-209ENST00000458268 ERFEQ4G0M1 354 aa24.11■■□□□ 1.45
USP39-209ENST00000458268 DIEXFQ68CQ4 756 aaKnown RBP24.11■■□□□ 1.45
USP39-209ENST00000458268 ZNF526Q8TF50 670 aaPredicted RBP24.11■■□□□ 1.45
USP39-209ENST00000458268 ABCC12Q96J65 1359 aa24.11■■□□□ 1.45
USP39-209ENST00000458268 IL16Q14005 1332 aa24.1■■□□□ 1.45
USP39-209ENST00000458268 FANCIQ9NVI1 1328 aa24.1■■□□□ 1.45
USP39-209ENST00000458268 ZNF34Q8IZ26 560 aa24.1■■□□□ 1.45
USP39-209ENST00000458268 PHAXQ9H814 394 aaKnown RBP24.1■■□□□ 1.45
USP39-209ENST00000458268 ARFGEF2Q9Y6D5 1785 aa24.1■■□□□ 1.45
USP39-209ENST00000458268 TWISTNBQ3B726 338 aaPredicted RBP24.09■■□□□ 1.45
USP39-209ENST00000458268 HSP90AB3PQ58FF7 597 aa24.09■■□□□ 1.45
USP39-209ENST00000458268 CCDC30Q5VVM6 783 aa24.09■■□□□ 1.45
USP39-209ENST00000458268 PPP1R42Q7Z4L9 355 aa24.09■■□□□ 1.45
USP39-209ENST00000458268 WDR63Q8IWG1 891 aa24.09■■□□□ 1.45
USP39-209ENST00000458268 RASSF7Q02833 373 aa24.08■■□□□ 1.45
USP39-209ENST00000458268 GOLGA2Q08379 1002 aa24.08■■□□□ 1.45
USP39-209ENST00000458268 ANKRD13DQ6ZTN6 518 aa24.08■■□□□ 1.45
USP39-209ENST00000458268 PDZRN3Q9UPQ7 1066 aa24.08■■□□□ 1.45
USP39-209ENST00000458268 SLX4Q8IY92 1834 aa24.07■■□□□ 1.44
USP39-209ENST00000458268 C21orf2O43822 256 aa24.07■■□□□ 1.44
USP39-209ENST00000458268 PARP10Q53GL7 1025 aa24.07■■□□□ 1.44
USP39-209ENST00000458268 RIC3Q7Z5B4 369 aa24.07■■□□□ 1.44
USP39-209ENST00000458268 PLBD2Q8NHP8 589 aa24.07■■□□□ 1.44
USP39-209ENST00000458268 MASTLQ96GX5 879 aa24.07■■□□□ 1.44
USP39-209ENST00000458268 STK31Q9BXU1 1019 aa24.07■■□□□ 1.44
USP39-209ENST00000458268 ATP5J2-PTCD1G3V325 749 aa24.06■■□□□ 1.44
USP39-209ENST00000458268 NTSR2O95665 410 aa24.06■■□□□ 1.44
USP39-209ENST00000458268 SRGNP10124 158 aa24.06■■□□□ 1.44
USP39-209ENST00000458268 NCBP3Q53F19 620 aaKnown RBP24.06■■□□□ 1.44
USP39-209ENST00000458268 CNKSR1Q969H4 720 aa24.06■■□□□ 1.44
USP39-209ENST00000458268 UTP14AQ9BVJ6 771 aaKnown RBP24.06■■□□□ 1.44
USP39-209ENST00000458268 CCER2I3L3R5 266 aa24.05■■□□□ 1.44
USP39-209ENST00000458268 EXOSC9Q06265 439 aaKnown RBP24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms