RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 MYZAPP0CAP1 466 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 PIBF1Q8WXW3 757 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 HYPKQ9NX55 129 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 WDHD1O75717 1129 aaPredicted RBP15.35■□□□□ 0.05
USP40-208ENST00000450966 SH2D4BQ5SQS7 431 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 C6orf163Q5TEZ5 329 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 ZNF428Q96B54 188 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 RLBP1P12271 317 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 SART3Q15020 963 aaKnown RBP15.35■□□□□ 0.05
USP40-208ENST00000450966 CTCFLQ8NI51 663 aaPredicted RBP15.35■□□□□ 0.05
USP40-208ENST00000450966 GOLGA1Q92805 767 aa15.35■□□□□ 0.05
USP40-208ENST00000450966 PRKAR2BP31323 418 aa15.34■□□□□ 0.05
USP40-208ENST00000450966 ARHGAP25P42331 645 aa15.34■□□□□ 0.05
USP40-208ENST00000450966 FYB1O15117 783 aa15.34■□□□□ 0.05
USP40-208ENST00000450966 TOP1P11387 765 aaKnown RBP15.34■□□□□ 0.05
USP40-208ENST00000450966 CCDC6Q16204 474 aa15.34■□□□□ 0.05
USP40-208ENST00000450966 CEP63Q96MT8 703 aa15.34■□□□□ 0.05
USP40-208ENST00000450966 DDX19AQ9NUU7 478 aaKnown RBP15.34■□□□□ 0.05
USP40-208ENST00000450966 ANKS4BQ8N8V4 417 aa15.34■□□□□ 0.05
USP40-208ENST00000450966 NSRP1Q9H0G5 558 aaKnown RBP15.34■□□□□ 0.05
USP40-208ENST00000450966 LARP1BQ659C4 914 aaKnown RBP15.34■□□□□ 0.05
USP40-208ENST00000450966 FEZ2Q9UHY8 353 aaPredicted RBP15.34■□□□□ 0.05
USP40-208ENST00000450966 HDXQ7Z353 690 aa15.33■□□□□ 0.05
USP40-208ENST00000450966 CASTP20810 708 aaKnown RBP15.33■□□□□ 0.04
USP40-208ENST00000450966 TTC12Q9H892 705 aaPredicted RBP15.33■□□□□ 0.04
USP40-208ENST00000450966 RIOK3O14730 519 aaKnown RBP15.33■□□□□ 0.04
USP40-208ENST00000450966 SCAND2PQ9GZW5 306 aaPredicted RBP15.33■□□□□ 0.04
USP40-208ENST00000450966 ITSN2Q9NZM3 1697 aa15.33■□□□□ 0.04
USP40-208ENST00000450966 ME1P48163 572 aa15.33■□□□□ 0.04
USP40-208ENST00000450966 VEZTQ9HBM0 779 aa15.33■□□□□ 0.04
USP40-208ENST00000450966 DUOX2Q9NRD8 1548 aa15.33■□□□□ 0.04
USP40-208ENST00000450966 IKQ13123 557 aaPredicted RBP15.32■□□□□ 0.04
USP40-208ENST00000450966 TEX13AQ9BXU3 409 aaPredicted RBP15.32■□□□□ 0.04
USP40-208ENST00000450966 A2MP01023 1474 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 KDM5BQ9UGL1 1544 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 CCT4P50991 539 aaKnown RBP15.32■□□□□ 0.04
USP40-208ENST00000450966 IFFO1Q0D2I5 559 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 ABCC5O15440 1437 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 WHAMMP3Q1A5X7 153 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 CNTROBQ8N137 903 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 LUC7L2Q9Y383 392 aaKnown RBP15.32■□□□□ 0.04
USP40-208ENST00000450966 FCHSD2O94868 740 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 ICE2Q659A1 982 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 TAF4BQ92750 862 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 SULT6B1Q6IMI4 303 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.32■□□□□ 0.04
USP40-208ENST00000450966 TMOD3Q9NYL9 352 aa15.32■□□□□ 0.04
USP40-208ENST00000450966 PAFAH1B1P43034 410 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 ATRIPQ8WXE1 791 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 JRKLQ9Y4A0 524 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 ADAMTS12P58397 1594 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 NPHP3Q7Z494 1330 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 SKILP12757 684 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 ZSCAN25Q6NSZ9 544 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 NAA15Q9BXJ9 866 aaKnown RBP15.31■□□□□ 0.04
USP40-208ENST00000450966 CCDC158Q5M9N0 1113 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 BCL2L12Q9HB09 334 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 UGGT2Q9NYU1 1516 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 UBAP1LF5GYI3 381 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 FBF1Q8TES7 1133 aa15.31■□□□□ 0.04
USP40-208ENST00000450966 PPP2R1AP30153 589 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 GNG11P61952 73 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 HDGFL1Q5TGJ6 251 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 FAM76AQ8TAV0 307 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 FSD1Q9BTV5 496 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 RAI14Q9P0K7 980 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 NSD2O96028 1365 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 WASLO00401 505 aaPredicted RBP15.3■□□□□ 0.04
USP40-208ENST00000450966 CCDC186Q7Z3E2 898 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 CNNM1Q9NRU3 951 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 RBM27Q9P2N5 1060 aaKnown RBP15.3■□□□□ 0.04
USP40-208ENST00000450966 PPP1R1BQ9UD71 204 aaPredicted RBP15.3■□□□□ 0.04
USP40-208ENST00000450966 CYP46A1Q9Y6A2 500 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 GOLGA5Q8TBA6 731 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 ANKRD62A6NC57 917 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 EPS15P42566 896 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 DDX46Q7L014 1031 aaKnown RBP15.3■□□□□ 0.04
USP40-208ENST00000450966 CFAP57Q96MR6 1250 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 VCXQ9H320 206 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 CTAGE15A4D2H0 777 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 EXOC5O00471 708 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 KIF4AO95239 1232 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 CTAGE8P0CG41 777 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 CTAGE6Q86UF2 777 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 CTAGE4Q8IX94 777 aa15.3■□□□□ 0.04
USP40-208ENST00000450966 BUB1BO60566 1050 aaPredicted RBP15.29■□□□□ 0.04
USP40-208ENST00000450966 FOSBP53539 338 aa15.29■□□□□ 0.04
USP40-208ENST00000450966 CKAP4Q07065 602 aaKnown RBP15.29■□□□□ 0.04
USP40-208ENST00000450966 CAMK4Q16566 473 aa15.29■□□□□ 0.04
USP40-208ENST00000450966 CHD1LQ86WJ1 897 aa15.29■□□□□ 0.04
USP40-208ENST00000450966 CCDC12Q8WUD4 166 aaPredicted RBP15.29■□□□□ 0.04
USP40-208ENST00000450966 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.29■□□□□ 0.04
USP40-208ENST00000450966 A0A087WZG4 1122 aa15.29■□□□□ 0.04
USP40-208ENST00000450966 ARFGAP2Q8N6H7 521 aa15.29■□□□□ 0.04
USP40-208ENST00000450966 ZPR1O75312 459 aa15.29■□□□□ 0.04
USP40-208ENST00000450966 UBE2HP62256 183 aa15.29■□□□□ 0.04
USP40-208ENST00000450966 CCDC38Q502W7 563 aa15.29■□□□□ 0.04
USP40-208ENST00000450966 ATP2C2O75185 946 aa15.29■□□□□ 0.04
USP40-208ENST00000450966 HCLS1P14317 486 aaPredicted RBP15.29■□□□□ 0.04
USP40-208ENST00000450966 PRIM1P49642 420 aaKnown RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms