RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 EHHADHQ08426 723 aa9.68□□□□□ -0.86
USP54-206ENST00000433394 BICDL1Q6ZP65 573 aa9.68□□□□□ -0.86
USP54-206ENST00000433394 TMC7Q7Z402 723 aa9.68□□□□□ -0.86
USP54-206ENST00000433394 HPS1Q92902 700 aa9.68□□□□□ -0.86
USP54-206ENST00000433394 GRIP2Q9C0E4 1043 aa9.68□□□□□ -0.86
USP54-206ENST00000433394 ZDHHC3Q9NYG2 299 aa9.68□□□□□ -0.86
USP54-206ENST00000433394 LRFN2Q9ULH4 789 aa9.68□□□□□ -0.86
USP54-206ENST00000433394 ZAP70P43403 619 aa9.67□□□□□ -0.86
USP54-206ENST00000433394 DNM1Q05193 864 aaKnown RBP9.67□□□□□ -0.86
USP54-206ENST00000433394 SH3PXD2AQ5TCZ1 1133 aa9.66□□□□□ -0.86
USP54-206ENST00000433394 CCDC87Q9NVE4 849 aa9.66□□□□□ -0.86
USP54-206ENST00000433394 KLK14Q9P0G3 267 aa9.66□□□□□ -0.86
USP54-206ENST00000433394 SPATA31C2B4DYI2 1134 aa9.65□□□□□ -0.86
USP54-206ENST00000433394 TREHO43280 583 aa9.65□□□□□ -0.86
USP54-206ENST00000433394 FZD6O60353 706 aa9.65□□□□□ -0.86
USP54-206ENST00000433394 MAPK8P45983 427 aa9.65□□□□□ -0.86
USP54-206ENST00000433394 XPCQ01831 940 aaPredicted RBP9.65□□□□□ -0.86
USP54-206ENST00000433394 C4orf17Q53FE4 359 aa9.65□□□□□ -0.86
USP54-206ENST00000433394 LYSMD3Q7Z3D4 306 aa9.65□□□□□ -0.86
USP54-206ENST00000433394 PIK3R5Q8WYR1 880 aa9.65□□□□□ -0.86
USP54-206ENST00000433394 GJA3Q9Y6H8 435 aa9.65□□□□□ -0.86
USP54-206ENST00000433394 UNCXA6NJT0 531 aa9.64□□□□□ -0.87
USP54-206ENST00000433394 PHKA2P46019 1235 aa9.64□□□□□ -0.87
USP54-206ENST00000433394 WDR44Q5JSH3 913 aa9.64□□□□□ -0.87
USP54-206ENST00000433394 C6orf118Q5T5N4 469 aa9.64□□□□□ -0.87
USP54-206ENST00000433394 NBPF10Q6P3W6 841 aaKnown RBP9.64□□□□□ -0.87
USP54-206ENST00000433394 TREML1Q86YW5 311 aa9.64□□□□□ -0.87
USP54-206ENST00000433394 EDEM1Q92611 657 aa9.64□□□□□ -0.87
USP54-206ENST00000433394 MRS2Q9HD23 443 aa9.64□□□□□ -0.87
USP54-206ENST00000433394 PDZRN3Q9UPQ7 1066 aa9.64□□□□□ -0.87
USP54-206ENST00000433394 TXLNAP40222 546 aa9.63□□□□□ -0.87
USP54-206ENST00000433394 ARSJQ5FYB0 599 aaPredicted RBP9.63□□□□□ -0.87
USP54-206ENST00000433394 FBXO33Q7Z6M2 555 aa9.63□□□□□ -0.87
USP54-206ENST00000433394 ATCAYQ86WG3 371 aa9.63□□□□□ -0.87
USP54-206ENST00000433394 POLIQ9UNA4 740 aa9.63□□□□□ -0.87
USP54-206ENST00000433394 FNDC3AQ9Y2H6 1198 aaKnown RBP9.63□□□□□ -0.87
USP54-206ENST00000433394 TGFBR3LH3BV60 316 aa9.62□□□□□ -0.87
USP54-206ENST00000433394 EPB42P16452 691 aa9.62□□□□□ -0.87
USP54-206ENST00000433394 LAPTM4AQ15012 233 aa9.62□□□□□ -0.87
USP54-206ENST00000433394 C8orf34Q49A92 452 aa9.62□□□□□ -0.87
USP54-206ENST00000433394 MRPL14Q6P1L8 145 aaKnown RBP9.62□□□□□ -0.87
USP54-206ENST00000433394 PRICKLE2Q7Z3G6 844 aa9.62□□□□□ -0.87
USP54-206ENST00000433394 ETFBKMTQ8IXQ9 262 aa9.62□□□□□ -0.87
USP54-206ENST00000433394 ZNF295-AS1Q8N0V1 137 aa9.62□□□□□ -0.87
USP54-206ENST00000433394 ALKBH8Q96BT7 664 aaKnown RBP9.62□□□□□ -0.87
USP54-206ENST00000433394 FAM129BQ96TA1 746 aa9.62□□□□□ -0.87
USP54-206ENST00000433394 A0A1B0GTH6 734 aa9.61□□□□□ -0.87
USP54-206ENST00000433394 FAM187AA6NFU0 413 aa9.61□□□□□ -0.87
USP54-206ENST00000433394 GFRA3O60609 400 aa9.61□□□□□ -0.87
USP54-206ENST00000433394 LDHBP07195 334 aaKnown RBP9.61□□□□□ -0.87
USP54-206ENST00000433394 P4HBP07237 508 aaKnown RBP9.61□□□□□ -0.87
USP54-206ENST00000433394 VAMP1P23763 118 aa9.61□□□□□ -0.87
USP54-206ENST00000433394 CTSOP43234 321 aaPredicted RBP9.61□□□□□ -0.87
USP54-206ENST00000433394 FMR1Q06787 632 aaKnown RBP eCLIP9.61□□□□□ -0.87
USP54-206ENST00000433394 GPR152Q8TDT2 470 aa9.61□□□□□ -0.87
USP54-206ENST00000433394 TIMMDC1Q9NPL8 285 aa9.61□□□□□ -0.87
USP54-206ENST00000433394 TTLL8A6PVC2 850 aa9.6□□□□□ -0.87
USP54-206ENST00000433394 ZBTB39O15060 712 aa9.6□□□□□ -0.87
USP54-206ENST00000433394 PRPF40AO75400 957 aaKnown RBP9.6□□□□□ -0.87
USP54-206ENST00000433394 MICAL2O94851 1124 aa9.6□□□□□ -0.87
USP54-206ENST00000433394 PDGFAP04085 211 aa9.6□□□□□ -0.87
USP54-206ENST00000433394 POU4F2Q12837 409 aa9.6□□□□□ -0.87
USP54-206ENST00000433394 IER5Q5VY09 327 aa9.6□□□□□ -0.87
USP54-206ENST00000433394 ALG1LQ6GMV1 187 aa9.6□□□□□ -0.87
USP54-206ENST00000433394 GJD3Q8N144 294 aa9.6□□□□□ -0.87
USP54-206ENST00000433394 PGBD3Q8N328 593 aa9.6□□□□□ -0.87
USP54-206ENST00000433394 TRIM67Q6ZTA4 783 aa9.59□□□□□ -0.87
USP54-206ENST00000433394 NUDT16Q96DE0 195 aaKnown RBP9.59□□□□□ -0.87
USP54-206ENST00000433394 SUSD3Q96L08 255 aa9.59□□□□□ -0.87
USP54-206ENST00000433394 NIF3L1Q9GZT8 377 aa9.59□□□□□ -0.87
USP54-206ENST00000433394 ARSDP51689 593 aa9.58□□□□□ -0.88
USP54-206ENST00000433394 RNF217Q8TC41 542 aa9.58□□□□□ -0.88
USP54-206ENST00000433394 KIAA1522Q9P206 1035 aaPredicted RBP9.58□□□□□ -0.88
USP54-206ENST00000433394 TCF3P15923 654 aa9.57□□□□□ -0.88
USP54-206ENST00000433394 IDH3AP50213 366 aa9.57□□□□□ -0.88
USP54-206ENST00000433394 DSC3Q14574 896 aa9.57□□□□□ -0.88
USP54-206ENST00000433394 CTC1Q2NKJ3 1217 aa9.57□□□□□ -0.88
USP54-206ENST00000433394 LCE2BO14633 110 aa9.56□□□□□ -0.88
USP54-206ENST00000433394 GPR182O15218 404 aa9.56□□□□□ -0.88
USP54-206ENST00000433394 PKDCCQ504Y2 493 aa9.56□□□□□ -0.88
USP54-206ENST00000433394 PNMA6FA0A0J9YX94 578 aa9.55□□□□□ -0.88
USP54-206ENST00000433394 PSMD2Q13200 908 aa9.55□□□□□ -0.88
USP54-206ENST00000433394 TSNAXIP1Q2TAA8 658 aa9.55□□□□□ -0.88
USP54-206ENST00000433394 FBF1Q8TES7 1133 aa9.55□□□□□ -0.88
USP54-206ENST00000433394 SORBS3O60504 671 aa9.54□□□□□ -0.88
USP54-206ENST00000433394 LRRC69Q6ZNQ3 347 aa9.54□□□□□ -0.88
USP54-206ENST00000433394 BTLAQ7Z6A9 289 aa9.54□□□□□ -0.88
USP54-206ENST00000433394 FRMD6Q96NE9 622 aa9.54□□□□□ -0.88
USP54-206ENST00000433394 DNAJC25Q9H1X3 360 aa9.54□□□□□ -0.88
USP54-206ENST00000433394 FIGNL2A6NMB9 653 aa9.53□□□□□ -0.88
USP54-206ENST00000433394 AVPP01185 164 aa9.53□□□□□ -0.88
USP54-206ENST00000433394 RHOQP17081 205 aa9.53□□□□□ -0.88
USP54-206ENST00000433394 MSX1P28360 303 aa9.53□□□□□ -0.88
USP54-206ENST00000433394 ENOX2Q16206 610 aaKnown RBP9.53□□□□□ -0.88
USP54-206ENST00000433394 EFHC2Q5JST6 749 aa9.53□□□□□ -0.88
USP54-206ENST00000433394 ZNF438Q7Z4V0 828 aa9.53□□□□□ -0.88
USP54-206ENST00000433394 CMTR1Q8N1G2 835 aaKnown RBP9.53□□□□□ -0.88
USP54-206ENST00000433394 HSH2DQ96JZ2 352 aa9.53□□□□□ -0.88
USP54-206ENST00000433394 CEP63Q96MT8 703 aa9.53□□□□□ -0.88
USP54-206ENST00000433394 DUSP9Q99956 384 aaKnown RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms