RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 MYH10P35580 1976 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 GOLGA6L9A6NEM1 432 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 TIAM1Q13009 1591 aa14.35□□□□□ -0.11
VPS13A-204ENST00000376634 NEMFO60524 1076 aa14.34□□□□□ -0.11
VPS13A-204ENST00000376634 POGZQ7Z3K3 1410 aa14.34□□□□□ -0.11
VPS13A-204ENST00000376634 MX1P20591 662 aa14.34□□□□□ -0.11
VPS13A-204ENST00000376634 CBX1P83916 185 aa14.34□□□□□ -0.11
VPS13A-204ENST00000376634 IFI16Q16666 785 aaKnown RBP14.34□□□□□ -0.11
VPS13A-204ENST00000376634 TTC12Q9H892 705 aaPredicted RBP14.34□□□□□ -0.11
VPS13A-204ENST00000376634 GLRX3O76003 335 aaKnown RBP14.34□□□□□ -0.11
VPS13A-204ENST00000376634 BMS1Q14692 1282 aaKnown RBP14.34□□□□□ -0.11
VPS13A-204ENST00000376634 ANKS4BQ8N8V4 417 aa14.34□□□□□ -0.11
VPS13A-204ENST00000376634 JADE2Q9NQC1 790 aa14.34□□□□□ -0.11
VPS13A-204ENST00000376634 IFIT1P09914 478 aaKnown RBP14.34□□□□□ -0.11
VPS13A-204ENST00000376634 CCDC172P0C7W6 258 aa14.34□□□□□ -0.11
VPS13A-204ENST00000376634 CNNM3Q8NE01 707 aa14.34□□□□□ -0.11
VPS13A-204ENST00000376634 MCM4P33991 863 aa14.34□□□□□ -0.11
VPS13A-204ENST00000376634 NOP2P46087 812 aaKnown RBP14.34□□□□□ -0.11
VPS13A-204ENST00000376634 C16orf45Q96MC5 204 aaPredicted RBP14.34□□□□□ -0.11
VPS13A-204ENST00000376634 THEMISQ8N1K5 641 aaPredicted RBP14.33□□□□□ -0.11
VPS13A-204ENST00000376634 ATAD2Q6PL18 1390 aa14.33□□□□□ -0.11
VPS13A-204ENST00000376634 PAXIP1Q6ZW49 1069 aaPredicted RBP14.33□□□□□ -0.11
VPS13A-204ENST00000376634 TCP11L1Q9NUJ3 509 aa14.33□□□□□ -0.11
VPS13A-204ENST00000376634 URI1O94763 535 aaPredicted RBP14.33□□□□□ -0.12
VPS13A-204ENST00000376634 IFIT5Q13325 482 aaKnown RBP14.33□□□□□ -0.12
VPS13A-204ENST00000376634 IQCGQ9H095 443 aaKnown RBP14.33□□□□□ -0.12
VPS13A-204ENST00000376634 LIG1P18858 919 aa14.33□□□□□ -0.12
VPS13A-204ENST00000376634 ARL1P40616 181 aaPredicted RBP14.33□□□□□ -0.12
VPS13A-204ENST00000376634 SMARCC1Q92922 1105 aaPredicted RBP14.33□□□□□ -0.12
VPS13A-204ENST00000376634 RASAL2Q9UJF2 1139 aa14.33□□□□□ -0.12
VPS13A-204ENST00000376634 SAMM50Q9Y512 469 aa14.33□□□□□ -0.12
VPS13A-204ENST00000376634 CCDC40Q4G0X9 1142 aa14.33□□□□□ -0.12
VPS13A-204ENST00000376634 BICD1Q96G01 975 aa14.33□□□□□ -0.12
VPS13A-204ENST00000376634 BACH2Q9BYV9 841 aa14.33□□□□□ -0.12
VPS13A-204ENST00000376634 NSD3Q9BZ95 1437 aa14.32□□□□□ -0.12
VPS13A-204ENST00000376634 CTTNBP2Q8WZ74 1663 aa14.32□□□□□ -0.12
VPS13A-204ENST00000376634 TIGD1Q96MW7 591 aa14.32□□□□□ -0.12
VPS13A-204ENST00000376634 RUSC2Q8N2Y8 1516 aa14.32□□□□□ -0.12
VPS13A-204ENST00000376634 ZNF444Q8N0Y2 327 aaPredicted RBP14.32□□□□□ -0.12
VPS13A-204ENST00000376634 SEPT6Q14141 434 aa14.32□□□□□ -0.12
VPS13A-204ENST00000376634 TCERG1LQ5VWI1 586 aa14.32□□□□□ -0.12
VPS13A-204ENST00000376634 NSRP1Q9H0G5 558 aaKnown RBP14.32□□□□□ -0.12
VPS13A-204ENST00000376634 TMOD3Q9NYL9 352 aa14.32□□□□□ -0.12
VPS13A-204ENST00000376634 SERPINA10Q9UK55 444 aa14.32□□□□□ -0.12
VPS13A-204ENST00000376634 MNAT1P51948 309 aa14.32□□□□□ -0.12
VPS13A-204ENST00000376634 PRPF40BQ6NWY9 871 aaKnown RBP14.32□□□□□ -0.12
VPS13A-204ENST00000376634 KIAA1107Q9UPP5 1409 aa14.31□□□□□ -0.12
VPS13A-204ENST00000376634 CABP1Q9NZU7 370 aa14.31□□□□□ -0.12
VPS13A-204ENST00000376634 FERMT3Q86UX7 667 aa14.31□□□□□ -0.12
VPS13A-204ENST00000376634 IL1RAPL2Q9NP60 686 aa14.31□□□□□ -0.12
VPS13A-204ENST00000376634 HSF2BPO75031 334 aa14.31□□□□□ -0.12
VPS13A-204ENST00000376634 CCDC174Q6PII3 467 aa14.31□□□□□ -0.12
VPS13A-204ENST00000376634 ZNF644Q9H582 1327 aaPredicted RBP14.31□□□□□ -0.12
VPS13A-204ENST00000376634 NUTM1Q86Y26 1132 aa14.31□□□□□ -0.12
VPS13A-204ENST00000376634 CCDC155Q8N6L0 562 aa14.31□□□□□ -0.12
VPS13A-204ENST00000376634 HSPA4P34932 840 aa14.31□□□□□ -0.12
VPS13A-204ENST00000376634 NAP1L3Q99457 506 aaPredicted RBP14.3□□□□□ -0.12
VPS13A-204ENST00000376634 PIP4K2BP78356 416 aa14.3□□□□□ -0.12
VPS13A-204ENST00000376634 RRS1Q15050 365 aaKnown RBP14.3□□□□□ -0.12
VPS13A-204ENST00000376634 EXOC1Q9NV70 894 aa14.3□□□□□ -0.12
VPS13A-204ENST00000376634 RAD54L2Q9Y4B4 1467 aa14.3□□□□□ -0.12
VPS13A-204ENST00000376634 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.3□□□□□ -0.12
VPS13A-204ENST00000376634 V9GYY5 206 aaPredicted RBP14.3□□□□□ -0.12
VPS13A-204ENST00000376634 CKAP4Q07065 602 aaKnown RBP14.3□□□□□ -0.12
VPS13A-204ENST00000376634 CA8P35219 290 aa14.3□□□□□ -0.12
VPS13A-204ENST00000376634 OTUD6BQ8N6M0 293 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 NLRP5P59047 1200 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 MXRA7P84157 204 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 KANK3Q6NY19 840 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 ERMNQ8TAM6 284 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 STMN4Q9H169 189 aaPredicted RBP14.29□□□□□ -0.12
VPS13A-204ENST00000376634 FSIP1Q8NA03 581 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 TBCAO75347 108 aaKnown RBP14.29□□□□□ -0.12
VPS13A-204ENST00000376634 TMC6Q7Z403 805 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 UTP14AQ9BVJ6 771 aaKnown RBP14.29□□□□□ -0.12
VPS13A-204ENST00000376634 EXOC6BQ9Y2D4 811 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 KIAA0753Q2KHM9 967 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 CCDC160A6NGH7 325 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 GTF2F1P35269 517 aaKnown RBP eCLIP14.29□□□□□ -0.12
VPS13A-204ENST00000376634 TMX1Q9H3N1 280 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 PRC1O43663 620 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 GOLIM4O00461 696 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 ODF2LQ9ULJ1 636 aa14.29□□□□□ -0.12
VPS13A-204ENST00000376634 KIF4AO95239 1232 aa14.28□□□□□ -0.12
VPS13A-204ENST00000376634 PDE4BQ07343 736 aa14.28□□□□□ -0.12
VPS13A-204ENST00000376634 CAVIN2O95810 425 aa14.28□□□□□ -0.12
VPS13A-204ENST00000376634 SNW1Q13573 536 aaKnown RBP14.28□□□□□ -0.12
VPS13A-204ENST00000376634 CFAP70Q5T0N1 1121 aa14.28□□□□□ -0.12
VPS13A-204ENST00000376634 MSL1Q68DK7 614 aa14.28□□□□□ -0.12
VPS13A-204ENST00000376634 USP37Q86T82 979 aa14.28□□□□□ -0.12
VPS13A-204ENST00000376634 TTF1Q15361 905 aaPredicted RBP14.28□□□□□ -0.12
VPS13A-204ENST00000376634 RGS22Q8NE09 1264 aa14.28□□□□□ -0.12
VPS13A-204ENST00000376634 DNAAF4Q8WXU2 420 aa14.28□□□□□ -0.12
VPS13A-204ENST00000376634 ZNF213O14771 459 aa14.28□□□□□ -0.12
VPS13A-204ENST00000376634 PAIP2Q9BPZ3 127 aaKnown RBP14.28□□□□□ -0.12
VPS13A-204ENST00000376634 ZFP91Q96JP5 570 aaPredicted RBP14.28□□□□□ -0.12
VPS13A-204ENST00000376634 APBB1IPQ7Z5R6 666 aaPredicted RBP14.28□□□□□ -0.12
VPS13A-204ENST00000376634 FBF1Q8TES7 1133 aa14.28□□□□□ -0.12
VPS13A-204ENST00000376634 IFIT3O14879 490 aaKnown RBP14.27□□□□□ -0.12
VPS13A-204ENST00000376634 ZNF354CQ86Y25 554 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms