RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 MRE11P49959 708 aa25.31■■□□□ 1.64
CCDC88B-203ENST00000359902 ISY1Q9ULR0 285 aaKnown RBP25.31■■□□□ 1.64
CCDC88B-203ENST00000359902 TNS3Q68CZ2 1445 aa25.31■■□□□ 1.64
CCDC88B-203ENST00000359902 ABCC6O95255 1503 aa25.31■■□□□ 1.64
CCDC88B-203ENST00000359902 IGKV5-2P06315 115 aa25.31■■□□□ 1.64
CCDC88B-203ENST00000359902 ERC1Q8IUD2 1116 aa25.31■■□□□ 1.64
CCDC88B-203ENST00000359902 ZNF496Q96IT1 587 aaPredicted RBP25.31■■□□□ 1.64
CCDC88B-203ENST00000359902 C5P01031 1676 aa25.3■■□□□ 1.64
CCDC88B-203ENST00000359902 CUL4AQ13619 759 aa25.3■■□□□ 1.64
CCDC88B-203ENST00000359902 RIC3Q7Z5B4 369 aa25.3■■□□□ 1.64
CCDC88B-203ENST00000359902 LARP1Q6PKG0 1096 aaKnown RBP25.3■■□□□ 1.64
CCDC88B-203ENST00000359902 BICC1Q9H694 974 aaKnown RBP25.3■■□□□ 1.64
CCDC88B-203ENST00000359902 CYP27B1O15528 508 aa25.29■■□□□ 1.64
CCDC88B-203ENST00000359902 MYL6BP14649 208 aa25.29■■□□□ 1.64
CCDC88B-203ENST00000359902 MCTP1Q6DN14 999 aa25.29■■□□□ 1.64
CCDC88B-203ENST00000359902 DCAF5Q96JK2 942 aa25.29■■□□□ 1.64
CCDC88B-203ENST00000359902 PANK2Q9BZ23 570 aa25.29■■□□□ 1.64
CCDC88B-203ENST00000359902 SPATA31A3Q5VYP0 1347 aa25.29■■□□□ 1.64
CCDC88B-203ENST00000359902 KLHL40Q2TBA0 621 aa25.28■■□□□ 1.64
CCDC88B-203ENST00000359902 XAGE3Q8WTP9 111 aa25.28■■□□□ 1.64
CCDC88B-203ENST00000359902 ECHDC1Q9NTX5 307 aa25.28■■□□□ 1.64
CCDC88B-203ENST00000359902 PLEKHG2Q9H7P9 1386 aa25.28■■□□□ 1.64
CCDC88B-203ENST00000359902 RAD50Q92878 1312 aa25.28■■□□□ 1.64
CCDC88B-203ENST00000359902 UPF3BQ9BZI7 483 aaKnown RBP25.28■■□□□ 1.64
CCDC88B-203ENST00000359902 LSG1Q9H089 658 aaKnown RBP25.28■■□□□ 1.64
CCDC88B-203ENST00000359902 GRPEL1Q9HAV7 217 aa25.28■■□□□ 1.64
CCDC88B-203ENST00000359902 COPS6Q7L5N1 327 aa25.27■■□□□ 1.64
CCDC88B-203ENST00000359902 GAS2L3Q86XJ1 694 aa25.26■■□□□ 1.63
CCDC88B-203ENST00000359902 DDX49Q9Y6V7 483 aaKnown RBP25.26■■□□□ 1.63
CCDC88B-203ENST00000359902 NEURL1BA8MQ27 555 aa25.26■■□□□ 1.63
CCDC88B-203ENST00000359902 IFIT2P09913 472 aaKnown RBP25.26■■□□□ 1.63
CCDC88B-203ENST00000359902 USP16Q9Y5T5 823 aa25.26■■□□□ 1.63
CCDC88B-203ENST00000359902 SASH1O94885 1247 aa25.25■■□□□ 1.63
CCDC88B-203ENST00000359902 SNRPA1P09661 255 aaKnown RBP25.25■■□□□ 1.63
CCDC88B-203ENST00000359902 CWC27Q6UX04 472 aaKnown RBP25.25■■□□□ 1.63
CCDC88B-203ENST00000359902 LRP10Q7Z4F1 713 aa25.25■■□□□ 1.63
CCDC88B-203ENST00000359902 INTS4Q96HW7 963 aaKnown RBP25.25■■□□□ 1.63
CCDC88B-203ENST00000359902 ANO8Q9HCE9 1232 aaPredicted RBP25.25■■□□□ 1.63
CCDC88B-203ENST00000359902 LMBRD1Q9NUN5 540 aa25.25■■□□□ 1.63
CCDC88B-203ENST00000359902 MRC1P22897 1456 aa25.25■■□□□ 1.63
CCDC88B-203ENST00000359902 NEXNQ0ZGT2 675 aa25.25■■□□□ 1.63
CCDC88B-203ENST00000359902 METTL22Q9BUU2 404 aaPredicted RBP25.25■■□□□ 1.63
CCDC88B-203ENST00000359902 GCKRQ14397 625 aa25.24■■□□□ 1.63
CCDC88B-203ENST00000359902 AACSQ86V21 672 aa25.24■■□□□ 1.63
CCDC88B-203ENST00000359902 GPATCH3Q96I76 525 aa25.24■■□□□ 1.63
CCDC88B-203ENST00000359902 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.24■■□□□ 1.63
CCDC88B-203ENST00000359902 CPDO75976 1380 aa25.24■■□□□ 1.63
CCDC88B-203ENST00000359902 TTC5Q8N0Z6 440 aa25.24■■□□□ 1.63
CCDC88B-203ENST00000359902 G3BP1Q13283 466 aaKnown RBP eCLIP25.23■■□□□ 1.63
CCDC88B-203ENST00000359902 NOL8Q76FK4 1167 aaKnown RBP25.23■■□□□ 1.63
CCDC88B-203ENST00000359902 SNX14Q9Y5W7 946 aa25.23■■□□□ 1.63
CCDC88B-203ENST00000359902 MYD88Q99836 296 aa25.23■■□□□ 1.63
CCDC88B-203ENST00000359902 ANKRD13DQ6ZTN6 518 aa25.22■■□□□ 1.63
CCDC88B-203ENST00000359902 KIAA1211Q6ZU35 1233 aa25.22■■□□□ 1.63
CCDC88B-203ENST00000359902 FAM43AQ8N2R8 423 aa25.22■■□□□ 1.63
CCDC88B-203ENST00000359902 PKD1L3Q7Z443 1732 aa25.22■■□□□ 1.63
CCDC88B-203ENST00000359902 EAF2Q96CJ1 260 aaPredicted RBP25.21■■□□□ 1.63
CCDC88B-203ENST00000359902 FMNL2Q96PY5 1086 aa25.21■■□□□ 1.63
CCDC88B-203ENST00000359902 DIAPH3Q9NSV4 1193 aa25.21■■□□□ 1.63
CCDC88B-203ENST00000359902 RASEFQ8IZ41 740 aa25.2■■□□□ 1.63
CCDC88B-203ENST00000359902 CABP4P57796 275 aa25.2■■□□□ 1.62
CCDC88B-203ENST00000359902 EPHA10Q5JZY3 1008 aa25.2■■□□□ 1.62
CCDC88B-203ENST00000359902 RUFY2Q8WXA3 655 aa25.2■■□□□ 1.62
CCDC88B-203ENST00000359902 EVI5LQ96CN4 794 aa25.2■■□□□ 1.62
CCDC88B-203ENST00000359902 PIP4K2AP48426 406 aaPredicted RBP25.19■■□□□ 1.62
CCDC88B-203ENST00000359902 HSPA2P54652 639 aa25.19■■□□□ 1.62
CCDC88B-203ENST00000359902 BRD1O95696 1058 aa25.19■■□□□ 1.62
CCDC88B-203ENST00000359902 CCDC8Q9H0W5 538 aaPredicted RBP25.18■■□□□ 1.62
CCDC88B-203ENST00000359902 SIL1Q9H173 461 aa25.18■■□□□ 1.62
CCDC88B-203ENST00000359902 PRPF40AO75400 957 aaKnown RBP25.17■■□□□ 1.62
CCDC88B-203ENST00000359902 BRINP3Q76B58 766 aa25.17■■□□□ 1.62
CCDC88B-203ENST00000359902 KLHDC4Q8TBB5 520 aa25.17■■□□□ 1.62
CCDC88B-203ENST00000359902 TTC14Q96N46 770 aa25.17■■□□□ 1.62
CCDC88B-203ENST00000359902 CHAMP1Q96JM3 812 aa25.17■■□□□ 1.62
CCDC88B-203ENST00000359902 PTH1RQ03431 593 aa25.16■■□□□ 1.62
CCDC88B-203ENST00000359902 FOXD4L5Q5VV16 416 aaPredicted RBP25.16■■□□□ 1.62
CCDC88B-203ENST00000359902 FOXD4L4Q8WXT5 416 aaPredicted RBP25.16■■□□□ 1.62
CCDC88B-203ENST00000359902 TLR7Q9NYK1 1049 aaKnown RBP25.15■■□□□ 1.62
CCDC88B-203ENST00000359902 NCLP19338 710 aaKnown RBP25.14■■□□□ 1.61
CCDC88B-203ENST00000359902 JARID2Q92833 1246 aaPredicted RBP25.14■■□□□ 1.61
CCDC88B-203ENST00000359902 XIRP1Q702N8 1843 aaKnown RBP25.13■■□□□ 1.61
CCDC88B-203ENST00000359902 CAVIN1Q6NZI2 390 aaKnown RBP25.13■■□□□ 1.61
CCDC88B-203ENST00000359902 GPT2Q8TD30 523 aa25.13■■□□□ 1.61
CCDC88B-203ENST00000359902 AK2P54819 239 aa25.12■■□□□ 1.61
CCDC88B-203ENST00000359902 COPRSQ9NQ92 184 aa25.12■■□□□ 1.61
CCDC88B-203ENST00000359902 RFX5P48382 616 aaPredicted RBP25.12■■□□□ 1.61
CCDC88B-203ENST00000359902 ZNF445P59923 1031 aa25.12■■□□□ 1.61
CCDC88B-203ENST00000359902 KCNB2Q92953 911 aa25.12■■□□□ 1.61
CCDC88B-203ENST00000359902 GLI3P10071 1580 aa25.11■■□□□ 1.61
CCDC88B-203ENST00000359902 WDR17Q8IZU2 1322 aa25.11■■□□□ 1.61
CCDC88B-203ENST00000359902 PRDM11Q9NQV5 511 aa25.11■■□□□ 1.61
CCDC88B-203ENST00000359902 HIP1O00291 1037 aa25.11■■□□□ 1.61
CCDC88B-203ENST00000359902 RUFY3Q7L099 469 aa25.11■■□□□ 1.61
CCDC88B-203ENST00000359902 UBE3BQ7Z3V4 1068 aa25.11■■□□□ 1.61
CCDC88B-203ENST00000359902 PLBD2Q8NHP8 589 aa25.11■■□□□ 1.61
CCDC88B-203ENST00000359902 ZCRB1Q8TBF4 217 aaKnown RBP25.11■■□□□ 1.61
CCDC88B-203ENST00000359902 PARP4Q9UKK3 1724 aaKnown RBP25.1■■□□□ 1.61
CCDC88B-203ENST00000359902 COL15A1P39059 1388 aa25.1■■□□□ 1.61
CCDC88B-203ENST00000359902 ATP5J2-PTCD1G3V325 749 aa25.1■■□□□ 1.61
CCDC88B-203ENST00000359902 PTCD1O75127 700 aaKnown RBP25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms