RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 EIF4A1P60842 406 aaKnown RBP19.14■□□□□ 0.65
HMGA1-202ENST00000347617 CEP85Q6P2H3 762 aa19.14■□□□□ 0.65
HMGA1-202ENST00000347617 TMX3Q96JJ7 454 aa19.14■□□□□ 0.65
HMGA1-202ENST00000347617 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.14■□□□□ 0.652e-259■■■■■ 48.7
HMGA1-202ENST00000347617 DMTNQ08495 405 aa19.13■□□□□ 0.65
HMGA1-202ENST00000347617 MPRIPQ6WCQ1 1025 aa19.13■□□□□ 0.65
HMGA1-202ENST00000347617 IFNL2Q8IZJ0 200 aa19.13■□□□□ 0.65
HMGA1-202ENST00000347617 TMEM87AQ8NBN3 555 aa19.13■□□□□ 0.65
HMGA1-202ENST00000347617 BTBD11A6QL63 1104 aa19.12■□□□□ 0.65
HMGA1-202ENST00000347617 CARD10Q9BWT7 1032 aa19.12■□□□□ 0.65
HMGA1-202ENST00000347617 GTPBP4Q9BZE4 634 aaKnown RBP19.12■□□□□ 0.65
HMGA1-202ENST00000347617 RGS12O14924 1447 aa19.12■□□□□ 0.65
HMGA1-202ENST00000347617 WDR33Q9C0J8 1336 aaKnown RBP19.12■□□□□ 0.65
HMGA1-202ENST00000347617 PHKG2P15735 406 aa19.11■□□□□ 0.65
HMGA1-202ENST00000347617 PKD1L3Q7Z443 1732 aa19.11■□□□□ 0.65
HMGA1-202ENST00000347617 COL5A2P05997 1499 aaPredicted RBP19.11■□□□□ 0.65
HMGA1-202ENST00000347617 HEG1Q9ULI3 1381 aa19.11■□□□□ 0.65
HMGA1-202ENST00000347617 SPTLC3Q9NUV7 552 aa19.11■□□□□ 0.65
HMGA1-202ENST00000347617 MEGF6O75095 1541 aa19.1■□□□□ 0.65
HMGA1-202ENST00000347617 NEK4P51957 841 aa19.1■□□□□ 0.65
HMGA1-202ENST00000347617 DNTTIP2Q5QJE6 756 aaKnown RBP19.1■□□□□ 0.65
HMGA1-202ENST00000347617 SIPA1L3O60292 1781 aaPredicted RBP19.1■□□□□ 0.65
HMGA1-202ENST00000347617 DCAF5Q96JK2 942 aa19.09■□□□□ 0.65
HMGA1-202ENST00000347617 COL22A1Q8NFW1 1626 aaPredicted RBP19.09■□□□□ 0.65
HMGA1-202ENST00000347617 ROBO1Q9Y6N7 1651 aa19.09■□□□□ 0.65
HMGA1-202ENST00000347617 CCT4P50991 539 aaKnown RBP19.09■□□□□ 0.65
HMGA1-202ENST00000347617 NOLC1Q14978 699 aaKnown RBP eCLIP19.09■□□□□ 0.65
HMGA1-202ENST00000347617 CCDC183Q5T5S1 534 aa19.09■□□□□ 0.65
HMGA1-202ENST00000347617 C16orf71Q8IYS4 520 aaPredicted RBP19.09■□□□□ 0.65
HMGA1-202ENST00000347617 SCN11AQ9UI33 1791 aa19.08■□□□□ 0.65
HMGA1-202ENST00000347617 NSFL1CQ9UNZ2 370 aaKnown RBP19.08■□□□□ 0.64
HMGA1-202ENST00000347617 DIAPH3Q9NSV4 1193 aa19.07■□□□□ 0.64
HMGA1-202ENST00000347617 FKBP5Q13451 457 aaPredicted RBP19.06■□□□□ 0.64
HMGA1-202ENST00000347617 HDGFL1Q5TGJ6 251 aa19.06■□□□□ 0.64
HMGA1-202ENST00000347617 TOM1L2Q6ZVM7 507 aa19.06■□□□□ 0.64
HMGA1-202ENST00000347617 RNF214Q8ND24 703 aa19.06■□□□□ 0.64
HMGA1-202ENST00000347617 ESYT1Q9BSJ8 1104 aa19.06■□□□□ 0.64
HMGA1-202ENST00000347617 SLC52A2Q9HAB3 445 aa19.06■□□□□ 0.64
HMGA1-202ENST00000347617 KIF3AQ9Y496 699 aa19.06■□□□□ 0.64
HMGA1-202ENST00000347617 PARP4Q9UKK3 1724 aaKnown RBP19.06■□□□□ 0.64
HMGA1-202ENST00000347617 KIF20AO95235 890 aa19.06■□□□□ 0.64
HMGA1-202ENST00000347617 PDE1AP54750 535 aa19.06■□□□□ 0.64
HMGA1-202ENST00000347617 FLIIQ13045 1269 aa19.06■□□□□ 0.64
HMGA1-202ENST00000347617 MRC1P22897 1456 aa19.06■□□□□ 0.64
HMGA1-202ENST00000347617 KDM6AO15550 1401 aaPredicted RBP19.04■□□□□ 0.64
HMGA1-202ENST00000347617 AOX1Q06278 1338 aa19.04■□□□□ 0.64
HMGA1-202ENST00000347617 CYP27B1O15528 508 aa19.04■□□□□ 0.64
HMGA1-202ENST00000347617 CHAF1AQ13111 956 aaPredicted RBP19.04■□□□□ 0.64
HMGA1-202ENST00000347617 G2E3Q7L622 706 aa19.04■□□□□ 0.64
HMGA1-202ENST00000347617 OTUD7AQ8TE49 926 aaPredicted RBP19.04■□□□□ 0.64
HMGA1-202ENST00000347617 SRCIN1Q9C0H9 1055 aa19.04■□□□□ 0.64
HMGA1-202ENST00000347617 N4BP2Q86UW6 1770 aaPredicted RBP19.04■□□□□ 0.64
HMGA1-202ENST00000347617 PXDNLA1KZ92 1463 aa19.04■□□□□ 0.64
HMGA1-202ENST00000347617 GIGYF1O75420 1035 aaPredicted RBP19.04■□□□□ 0.64
HMGA1-202ENST00000347617 MX1P20591 662 aa19.04■□□□□ 0.64
HMGA1-202ENST00000347617 EVA1CP58658 441 aa19.04■□□□□ 0.64
HMGA1-202ENST00000347617 NKX1-1Q15270 411 aaPredicted RBP19.04■□□□□ 0.64
HMGA1-202ENST00000347617 ZCRB1Q8TBF4 217 aaKnown RBP19.04■□□□□ 0.64
HMGA1-202ENST00000347617 ATP6V1DQ9Y5K8 247 aa19.04■□□□□ 0.64
HMGA1-202ENST00000347617 PCDH11XQ9BZA7 1347 aa19.03■□□□□ 0.64
HMGA1-202ENST00000347617 PCDH11YQ9BZA8 1340 aa19.03■□□□□ 0.64
HMGA1-202ENST00000347617 IL2RBP14784 551 aa19.03■□□□□ 0.64
HMGA1-202ENST00000347617 COL14A1Q05707 1796 aaKnown RBP19.02■□□□□ 0.64
HMGA1-202ENST00000347617 GOLGA6L6A8MZA4 724 aa19.02■□□□□ 0.64
HMGA1-202ENST00000347617 TOM1O60784 492 aa19.02■□□□□ 0.64
HMGA1-202ENST00000347617 KCNQ3O43525 872 aa19.01■□□□□ 0.63
HMGA1-202ENST00000347617 ZSCAN20P17040 1043 aaPredicted RBP19.01■□□□□ 0.63
HMGA1-202ENST00000347617 ZNF790Q6PG37 636 aa19.01■□□□□ 0.63
HMGA1-202ENST00000347617 DBF4Q9UBU7 674 aaPredicted RBP19.01■□□□□ 0.63
HMGA1-202ENST00000347617 TCHHQ07283 1943 aa19.01■□□□□ 0.63
HMGA1-202ENST00000347617 RPAP1Q9BWH6 1393 aaPredicted RBP19.01■□□□□ 0.63
HMGA1-202ENST00000347617 SALL3Q9BXA9 1300 aa19.01■□□□□ 0.63
HMGA1-202ENST00000347617 ADCY5O95622 1261 aa19.01■□□□□ 0.63
HMGA1-202ENST00000347617 UBE2HP62256 183 aa19.01■□□□□ 0.63
HMGA1-202ENST00000347617 USP48Q86UV5 1035 aa19.01■□□□□ 0.63
HMGA1-202ENST00000347617 USP25Q9UHP3 1055 aa19.01■□□□□ 0.63
HMGA1-202ENST00000347617 ERVV-2B6SEH9 535 aa19■□□□□ 0.63
HMGA1-202ENST00000347617 SMARCA5O60264 1052 aaPredicted RBP19■□□□□ 0.63
HMGA1-202ENST00000347617 SYCP1Q15431 976 aa19■□□□□ 0.63
HMGA1-202ENST00000347617 KDM4AO75164 1064 aa18.99■□□□□ 0.63
HMGA1-202ENST00000347617 ZNF710Q8N1W2 664 aa18.99■□□□□ 0.63
HMGA1-202ENST00000347617 STAP2Q9UGK3 403 aa18.99■□□□□ 0.63
HMGA1-202ENST00000347617 PDIA4P13667 645 aaKnown RBP18.98■□□□□ 0.63
HMGA1-202ENST00000347617 LARP1Q6PKG0 1096 aaKnown RBP18.98■□□□□ 0.63
HMGA1-202ENST00000347617 NFATC2IPQ8NCF5 419 aa18.98■□□□□ 0.63
HMGA1-202ENST00000347617 GNAI3P08754 354 aa18.97■□□□□ 0.63
HMGA1-202ENST00000347617 CHMLP26374 656 aa18.97■□□□□ 0.63
HMGA1-202ENST00000347617 TAF3Q5VWG9 929 aa18.97■□□□□ 0.63
HMGA1-202ENST00000347617 MEIS3Q99687 375 aa18.97■□□□□ 0.63
HMGA1-202ENST00000347617 FEZ1Q99689 392 aa18.97■□□□□ 0.63
HMGA1-202ENST00000347617 HYPKQ9NX55 129 aa18.97■□□□□ 0.63
HMGA1-202ENST00000347617 EIF2S2P20042 333 aaKnown RBP18.96■□□□□ 0.63
HMGA1-202ENST00000347617 CABP4P57796 275 aa18.96■□□□□ 0.63
HMGA1-202ENST00000347617 FOXD4L5Q5VV16 416 aaPredicted RBP18.96■□□□□ 0.63
HMGA1-202ENST00000347617 FOXD4L4Q8WXT5 416 aaPredicted RBP18.96■□□□□ 0.63
HMGA1-202ENST00000347617 LRRCC1Q9C099 1032 aa18.96■□□□□ 0.63
HMGA1-202ENST00000347617 BTG4Q9NY30 223 aa18.96■□□□□ 0.63
HMGA1-202ENST00000347617 GNAI2P04899 355 aa18.96■□□□□ 0.63
HMGA1-202ENST00000347617 ZSCAN22P10073 491 aaPredicted RBP18.96■□□□□ 0.63
HMGA1-202ENST00000347617 PDCL2Q8N4E4 241 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms