RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 H0YHG0 523 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 SARNPP82979 210 aaKnown RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 KCNA1Q09470 495 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 TEX11Q8IYF3 940 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 DNAJC5Q9H3Z4 198 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 SLC26A8Q96RN1 970 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 STRN4Q9NRL3 753 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 ARHGEF11O15085 1522 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 PPLO60437 1756 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 KARSQ15046 597 aaKnown RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 INTS4Q96HW7 963 aaKnown RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 RNF17Q9BXT8 1623 aaKnown RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 PRIM1P49642 420 aaKnown RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 SLC4A7Q9Y6M7 1214 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 CCDC144CPQ8IYA2 1237 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 PSMD2Q13200 908 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 PICK1Q9NRD5 415 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 PIK3C2GO75747 1445 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 HNRNPMP52272 730 aaKnown RBP eCLIP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 ANKRD30BQ9BXX2 1392 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 IL1RAPL2Q9NP60 686 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 GEMIN8Q9NWZ8 242 aaKnown RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 BLMP54132 1417 aaPredicted RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 NASPP49321 788 aaPredicted RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 UTS2BQ765I0 119 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 CCDC50Q8IVM0 306 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 IQGAP3Q86VI3 1631 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 GPTP24298 496 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 SMC5Q8IY18 1101 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 PHC3Q8NDX5 983 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 ARHGAP45Q92619 1136 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 SIL1Q9H173 461 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 TMA7Q9Y2S6 64 aaKnown RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 ANK1P16157 1881 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 F6X3S4 739 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 GOLGA2Q08379 1002 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 PUF60Q9UHX1 559 aaKnown RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 TIGD1Q96MW7 591 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 IVLP07476 585 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 ANO4Q32M45 955 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 MORC4Q8TE76 937 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 NBPF8Q3BBV2 869 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 UHMK1Q8TAS1 419 aaKnown RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 MYO3AQ8NEV4 1616 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 ST18O60284 1047 aa4.14□□□□□ -1.75
SYNE1-201ENST00000341594 TAB3Q8N5C8 712 aaPredicted RBP4.14□□□□□ -1.75
SYNE1-201ENST00000341594 EIF4G3O43432 1585 aaKnown RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 ST20-MTHFSA0A0A6YYL1 179 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 USHBP1Q8N6Y0 703 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 SNRKQ9NRH2 765 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 SWAP70Q9UH65 585 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 BICRAQ9NZM4 1560 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 SMIM23A6NLE4 172 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 HSP90AB2PQ58FF8 381 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 AK7Q96M32 723 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 ANKRD62A6NC57 917 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 IFT172Q9UG01 1749 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 TPM4P67936 248 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 OGFRQ9NZT2 677 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 SASS6Q6UVJ0 657 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 NEUROD6Q96NK8 337 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 TBC1D2Q9BYX2 928 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 ARL10Q8N8L6 244 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 BCORL1Q5H9F3 1711 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 CA8P35219 290 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 ATP2B3Q16720 1220 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 SMC4Q9NTJ3 1288 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 RRP1P56182 461 aaKnown RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 CCDC24Q8N4L8 307 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 ST13P5Q8NFI4 369 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 UPF3BQ9BZI7 483 aaKnown RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 GRPEL1Q9HAV7 217 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 ANXA1P04083 346 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 PTGS1P23219 599 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 ZRANB1Q9UGI0 708 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 GTPBP6O43824 516 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 PARD3Q8TEW0 1356 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 SEC31AO94979 1220 aaKnown RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 ANKRD27Q96NW4 1050 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 TDRD15B5MCY1 1934 aaKnown RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 KLHL40Q2TBA0 621 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 EIF3JO75822 258 aaKnown RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 IKQ13123 557 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 PDS5BQ9NTI5 1447 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 SPTY2D1Q68D10 685 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 ZCRB1Q8TBF4 217 aaKnown RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 CAGE1Q8TC20 777 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 PRDM15P57071 1507 aaPredicted RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 GOLGA6L9A6NEM1 432 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 BANK1Q8NDB2 785 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 MYLKQ15746 1914 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 MOV10L1Q9BXT6 1211 aaKnown RBP4.13□□□□□ -1.75
SYNE1-201ENST00000341594 TERF2IPQ9NYB0 399 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 MYO9BQ13459 2157 aa4.13□□□□□ -1.75
SYNE1-201ENST00000341594 SETBP1Q9Y6X0 1596 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 ADCY5O95622 1261 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 PODNQ7Z5L7 613 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 SPIRE2Q8WWL2 714 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 ACBD3Q9H3P7 528 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms