RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 FHOD1Q9Y613 1164 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 ZSCAN12O43309 604 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC175P0C221 793 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 DZIP3Q86Y13 1208 aaKnown RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 N4BP2L2Q92802 583 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 ARHGEF1Q92888 912 aaKnown RBP4.81□□□□□ -1.64
NEDD4-201ENST00000338963 FAM212AQ96EL1 285 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 TRIM7Q9C029 511 aa4.81□□□□□ -1.64
NEDD4-201ENST00000338963 LZTS2Q9BRK4 669 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 PARD3Q8TEW0 1356 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 PSDA5PKW4 1024 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 PDLIM1O00151 329 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 CLCN6P51797 869 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 SLFN5Q08AF3 891 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 RGL3Q3MIN7 710 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 TRIM74Q86UV6 250 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 TRIM73Q86UV7 250 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 HELBQ8NG08 1087 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC47Q96A33 483 aaKnown RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ZNF396Q96N95 335 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ANKRD27Q96NW4 1050 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 NAP1L3Q99457 506 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 CWC25Q9NXE8 425 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 MYBL2P10244 700 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ARHGAP29Q52LW3 1261 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ACBD5Q5T8D3 534 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 L3MBTL2Q969R5 705 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 HOOK2Q96ED9 719 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 L2HGDHQ9H9P8 463 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 MCM8Q9UJA3 840 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 DDX19BQ9UMR2 479 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 AKAP2Q9Y2D5 859 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ERC2O15083 957 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 CAND2O75155 1236 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 CYP2E1P05181 493 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 PSMD2Q13200 908 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 LRRFIP1Q32MZ4 808 aaKnown RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 CEP85LQ5SZL2 805 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 IQCA1Q86XH1 822 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 TMEM87AQ8NBN3 555 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ZNF446Q9NWS9 450 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 NKTRP30414 1462 aaKnown RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 LRRC9Q6ZRR7 1453 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ARAP1Q96P48 1450 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 OPA1O60313 960 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 E2F6O75461 281 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 PECAM1P16284 738 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 GPTP24298 496 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 SH2D4BQ5SQS7 431 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 PIK3R5Q8WYR1 880 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 BHMTQ93088 406 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 TEKT1Q969V4 418 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ACTR5Q9H9F9 607 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ABCA5Q8WWZ7 1642 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 TTC41PQ6P2S7 1318 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ZFXP17010 805 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 IQCB1Q15051 598 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 TATDN2Q93075 761 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 INTS4Q96HW7 963 aaKnown RBP4.8□□□□□ -1.64
NEDD4-201ENST00000338963 UBXN6Q9BZV1 441 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 ADAM21Q9UKJ8 722 aa4.8□□□□□ -1.64
NEDD4-201ENST00000338963 FHOD3Q2V2M9 1422 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 SNW1Q13573 536 aaKnown RBP4.79□□□□□ -1.64
NEDD4-201ENST00000338963 KIF4BQ2VIQ3 1234 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 FCHSD1Q86WN1 690 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 PPP1R14BQ96C90 147 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 RABEP2Q9H5N1 569 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 SCP2P22307 547 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 HNRNPH1P31943 449 aaKnown RBP4.79□□□□□ -1.64
NEDD4-201ENST00000338963 SAMD3Q8N6K7 520 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 RPS6KL1Q9Y6S9 549 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 U3KPZ7 1027 aaPredicted RBP4.79□□□□□ -1.64
NEDD4-201ENST00000338963 USP47Q96K76 1375 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 SEC24BO95487 1268 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC73Q6ZRK6 1079 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 GCC1Q96CN9 775 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 MRFAP1L1Q96HT8 127 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 ALS2CR12Q96Q35 445 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 TRIM5Q9C035 493 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 RMI1Q9H9A7 625 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 ORC3Q9UBD5 711 aaPredicted RBP4.79□□□□□ -1.64
NEDD4-201ENST00000338963 PHLPP2Q6ZVD8 1323 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 FERP16591 822 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 GYS2P54840 703 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.79□□□□□ -1.64
NEDD4-201ENST00000338963 RGL1Q9NZL6 768 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 NAA25Q14CX7 972 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 ANKRD45Q5TZF3 282 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 MAB21L3Q8N8X9 362 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 HDAC7Q8WUI4 952 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 SMARCC1Q92922 1105 aaPredicted RBP4.79□□□□□ -1.64
NEDD4-201ENST00000338963 ATP6V0A4Q9HBG4 840 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 TUBA8Q9NY65 449 aaPredicted RBP4.79□□□□□ -1.64
NEDD4-201ENST00000338963 PYCARDQ9ULZ3 195 aa4.79□□□□□ -1.64
NEDD4-201ENST00000338963 GOLGA6L10A0A0M3HER8 536 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC151A5D8V7 595 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 PLA2G4AP47712 749 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 NLRP5P59047 1200 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 SNCBQ16143 134 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 DUSP27Q5VZP5 1158 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms